Pseudomonas sp. FH4, H097_RS01665
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. FH4 scf_29086_110.1_contig_1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCAGTGTGATCTGCCGCGACGCGGCTGGTTTCAAGGGCCCGGCCCTGTTGCAGAACATCCTGGAAAGCGGCCTGCGTTTTGGCGAGATGGATATTTTCC ACCGCCACGAAAGCATGGCCGGTAACGGTGAAGTACTGTTCTCCATGGCCAATGCGGTCAAGCCGGGCACGTTCGACCTGGACGATATCGACCTGTTCAG CACCCCGGCGGTGAGTTTCTTCCTCGGTCTGCCAGGCCCGCGTCATCCGAAACAGGCGTTCGACGTCATGGTGGCCGCAGCCCGCAAGCTGTCCCAGGAA CTCAACGGCGAGCTCAAGGACGACCAGCGCAGCGTGCTGACCGCCCAGACCATCGAACATTACCGTCAGCGTATCGTCGAGTTCGAGCGTCGCGCCCTGA CACAGAAGCGCTAAGGTTCAATCCTAAGCGTTGCCTGTAGAATCCGTGCACTACATATTGAGCAGCTTCGGCTGCTCTTTTGCTTTATGAGAGAACACCC
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| DNA Sequence for Gene |
>H097_RS01665
ATGACCGCCGCCCACACCCGCATCCTCGAACTGCGCGCTGAACTGGATCAGCACAACTACCGCTATCACGTACTCGACGAGCCGAGCATCCCGGACGCCG AGTACGATCGGTTGTTCCACGAACTCAAGGCCCTTGAGGCCGAGCACCCGGACCTGGTTACCCGTGATTCGCCCACGCAGCGGGTCGGCAGCGCGGCGTT GTCGGCCTTTACCCAGGTGCGCCACGAGATCCCGATGCTCAGCCTGGGCAACGCCTTTGATGAAGCCACCATGCTGGAATTCGATCGCCGGGTCACCGAG GGCCTCGACCTGCCAGTGGGCGATCTGTTTGGTGGTGGCGCGGCGGTGGAATACAGCTGTGAGCCCAAGCTCGATGGCCTGGCGGTCAGCCTGCTGTATC AGGACGGCGAGCTGGTACGTGGCGCGACCCGCGGCGATGGCACCACGGGAGAAGACATCAGCGTCAATGTGCGCACCGTGCGTAATATTCCGTTGAAGCT GCAAGGCAGTGGCTGGCCGGCGACCCTGGAAGTGCGCGGCGAAGTGTTTATGTCCAAGGCTGGTTTTGAGCGTTTGAATGCCACGCAGTTGGAAGTCGGC GGCAAGACGTTCGCCAACCCACGCAACGCAGCCGCCGGGAGCCTGCGCCAACTCGACTCGAAGATCACCGCCAGCCGCCCGCTGGAGTTCTGCTGCTACG GCGTGACGACGGATATCAGCGACACCCATATCGGTAACCTGCAGCAGTTGCAGAAGTGGGGCATGCCCATCAGTCACGAGCTGAAGCTGGCCAAGGGCAT TGAGGATTGCCTGGAGTACTACCGCGATATCGGTGAGCGGCGTAACAGCCTGCCGTATGAAATCGACGGTGTGGTGTTCAAGGTCAACAGCATCGCCTAC CAGCGTGAACTGGGCTTTCGCGCCCGCGAGCCGCGTTGGGCCATCGCCCATAAATTCCCGGCGATGGAGGAGCTGACCGAGTTGCTGGACGTTGAATTCC AGGTCGGTCGCACCGGCGCCGTGACGCCAGTGGCGCGCTTGAAGCCGGTCAAGGTCGCGGGCGTCACCGTGTCCAATGCGACGTTGCACAACATGGACGA AGTGGCGCGCCTGGGCTTGATGATTGGCGACACGGTGATCATCCGCCGTGCCGGTGATGTGATCCCACAGGTCGTGTCGGTGGTTGTCGAGCGTCGCCCG GAAAATGCCCGCGCCGTGCAGATCCCGCAGAGCTGCCCGGTGTGTGGCTCCCACGTGGAGCGCACGCAACTGGTCAAGCGCAGCAAGGGCAAGGAAACCG TCAGCGAAGGCGCGGTGTATCGCTGCGTCGGGCGCCTGGCCTGTGGTGCGCAGCTCAAGCAGGCGATTATCCATTTCGTTTCGCGCCGGGCCATGGACAT CGACGGCCTGGGTGACAAGACCATCGAGCAGTTGGTCGATGAAAAGCTCATTGGCTCGCCGGCCGACCTCTACAAACTCAAGTACGAGCAGATCATCGAC CTGGAAGGCTTTGCCGATGTTTCCAGCAAGAAACTGATCGCCGCCATCGAAAACAGCAAGACCCCGACCCTGGCGCGTTTCATCTACGCCCTGGGCATTC CCGATGTGGGCGAGGAAACCGCCAAGGTGCTGGCGCGCTCCCTGGCCTCTCTTGAGCGTGTCCAGCAGGCGCTGCCGGAAGTGTTGACGTACTTGCCGGA TGTTGGCCTGGAAGTGGCTCACGAGATCCACAGCTTCTTTGAAGACAGCCACAACCGGCAGGTGATTGGCGCTCTGCTGTCGCCGGATGAATGTGCGCTG GTCTTGCAGGACCAGGGCGAACTCAGTGCCGAGTTTGCCGCCAGTACCACCCTGGGCGGCTTGCTCGACAAGTTGCACGTACCTTCCGTGGGGCCGGGGG CTGCGCAGAAGCTGGCAGACAAGTTCGGCTCCCTGGAGGGCGTGATAAAGGCTGACTGGCTGGACATGCGCCAGGCTTTGCCGGAGAAGCAGGCCAAGTC CGTGCGTGAGTTCTTTGATAATGAAGAGAATGCCCGTCGTGCGCTGGCCATTGAGCAGCAGCTCAAGGACTTCGGCATGCACTGGCAGAGCGAGAAGAAG GTGGTCGAGGGCCTGCCTGAGGCGGGCCGCACGTGGGTCTTGACCGGGTCGCTGGAGCTGATGAGCCGCGACGTGGCCAAGGAAAAGCTCGAAAGCCTGG GCGCCAAGGTGGCGGGCTCGGTATCGGCGAAAACCCATTGTGTGGTCGCAGGGCCGGGCGCCGGGTCGAAACTGGCCAAGGCCAGCGAGCTGGGGGTGAA GGTCTTGGACGAGGAGGCGTTCGTCGCCTTCCTGGCCAAGCACCACATCACGGTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TACCGACCCGATCCTGTAGGAGCGAGCTTGCTCGCGAAAAACCTCAACGATAACGCGGGGTATCTGGTTCCCCGTGGCGGTCTCAGGTTCTTCGCGAGCA AGCTCGCTCCTGCAGGGCATTCACTTTGAACGATCTTGCGTGGGAAATGATCTAGTCTTGGGCACGCCCTAGGGAAAGATCGCCATGTTCCGCTACTTCG AGCAACTCAGTTCGCGCATTGCTGCGCCGCACATGGCCGGGACTTCGCGCAACAGTAAGGTCTGGCAATGCCGTTGCGGGCAGTCGCTGTTCTTTCGCAA CAGCCAGTGCCTGACCTGCTCGGCGCTGTTGGGCTATCAGCCTGAGCACAGCCGCCTATCGTCCCTACAGCCGGGCCCCGTGGTCGATACCTGGTTGCAG GACGATAACCTGCAGGCGGGCGCCTTCCGCCGTTGCGCCAACCTCGACACCGCGGCCGCCTGCAACTGGCTGATTCCGGCCCAGAGCACCGCGCAGTTGT
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| Amino Acid Sequence |
>NAD-dependent DNA ligase LigA
MTAAHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPDLVTRDSPTQRVGSAALSAFTQVRHEIPMLSLGNAFDEATMLEFDRRVTE GLDLPVGDLFGGGAAVEYSCEPKLDGLAVSLLYQDGELVRGATRGDGTTGEDISVNVRTVRNIPLKLQGSGWPATLEVRGEVFMSKAGFERLNATQLEVG GKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVTTDISDTHIGNLQQLQKWGMPISHELKLAKGIEDCLEYYRDIGERRNSLPYEIDGVVFKVNSIAY QRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVSVVVERRP ENARAVQIPQSCPVCGSHVERTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIDGLGDKTIEQLVDEKLIGSPADLYKLKYEQIID LEGFADVSSKKLIAAIENSKTPTLARFIYALGIPDVGEETAKVLARSLASLERVQQALPEVLTYLPDVGLEVAHEIHSFFEDSHNRQVIGALLSPDECAL VLQDQGELSAEFAASTTLGGLLDKLHVPSVGPGAAQKLADKFGSLEGVIKADWLDMRQALPEKQAKSVREFFDNEENARRALAIEQQLKDFGMHWQSEKK VVEGLPEAGRTWVLTGSLELMSRDVAKEKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGVKVLDEEAFVAFLAKHHITV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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