Pseudomonas sp. FH4, H097_RS18200 (fliN)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0071973 bacterial-type flagellum-dependent cell motility
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00956
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0009288 bacterial-type flagellum
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02480
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02480
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003774 motor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00956
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0009425 bacterial-type flagellum basal body
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00956
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00956
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IPR001543 Flagellar motor switch protein FliN-like, C-terminal domain 76 145 3.2E-24
NCBIfam TIGR02480 JCVI: flagellar motor switch protein FliN IPR012826 Flagellar motor switch FliN 72 147 9.0E-33
SUPERFAMILY SSF101801 Surface presentation of antigens (SPOA) IPR036429 SpoA-like superfamily 72 153 2.35E-25
Gene3D G3DSA:2.30.330.10 - IPR036429 SpoA-like superfamily 66 155 1.1E-30
PRINTS PR00956 Flagellar motor switch protein FliN signature IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb 92 108 4.2E-28
PRINTS PR00956 Flagellar motor switch protein FliN signature IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb 75 91 4.2E-28
PANTHER PTHR43484 - - - 51 155 1.3E-33
FunFam G3DSA:2.30.330.10:FF:000001 Flagellar motor switch protein FliN - - 64 155 5.0E-50
PRINTS PR00956 Flagellar motor switch protein FliN signature IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb 108 121 4.2E-28
PRINTS PR00956 Flagellar motor switch protein FliN signature IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb 121 136 4.2E-28

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.