Pseudomonas sp. PH1b, U873_RS0119460

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. PH1b Contig11, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CCACCGGCCAGCGGGTGCACAAGCCGGTGAAGATCACCAAGGTTTTCGACAAGGCGTCACCGTTGCTGCTGGCCGCCCTGACCTCCGGCGAGCGCCTGAG CAAGATCGAGATTCAGTGGTTCCGCACCTCCGCCGCTGGCACCCAGGAGCACTACTTCACCACCACCCTGGAAGACGCGATCATCGTTGACATCAAAGAC TACATGCACAACTGCCAGGACCCGTCTAACGCACATTTCACCCACTTGGAGGACGTCGAGTTCACCTACCGCAAGATCACCTGGACCCATGAAGTATCCG GCACTTCGGGGTCCGATGACTGGCGTACCCCGGTTGCCGGCTAAGCCCGGCGCAGTGATTCAACCCCTCGGCCAGCAGGGCTGGTCGATGGGGTTGGCGC TTTGGGGAGGGATGGGGAAGACGCTCTGGTCCTCAGTCGAGTAGGGTAGGGATCGGAAAGAGAGTGCCAGTGAGCACTTCACAGAGTGGAGAGGGGTGGT
DNA Sequence for Gene
>U873_RS0119460
ATGCGTCAAAGGGATTTGCAGTTCACTTTTTCCGTGCTGACCGCGCAGGTGGCGTTCGAGGTTGTGGAGTTCACCCTCGAAGAGGCCTTGTCCGAGCCTT ATCGGTTGACCCTCGAACTGGCGAGTGAAAACGCTGCGATCGACTTCGGCCAGATCCTCGACCAGCCGGCCCTGCTGACCCTCTGGCAAGGCGGCATGCA GGTCCGCCATGTGCATGGCCTGGTCACCCGCTTCACCCAGGGTAAAACCGGTTTTCGTCGCACCCGGTACTCGCTGCTGGTGGAGCCGCAACTGGCCCGG CTGGCGCTGAGTTCCGACTGGCGTATTTTTCAGCAAAAAACGGTGCCCGATATCCTCAAGTCGCTGCTGGACGAGCACGGCGTTCTTGCCTACCAACCCT ATATCCACACCGAACATGCGCCTCGTGAATACTGCGTCCAGGCCGGAGACACCGACCTCTATCTGTTTGACCGCCTGTCCACCGAGGAAGGCCTGTTCTA TTTTTTCAAACACGATGCAAACAGCCACACTCTGGTTCAGGGTGACAAGTTATACGTTCAGGAGCGCATCCCGGGGGCGCCGGTGCTGTACACCACGCAG CCGGCCGGGGATGCCACGCAACCTGTGCTGTACGGGTTCAGCTACACGGAAACCGTGTGCACCGCCGAGCAGACGCAGCGCGACTACAGCTTCAAGCGCC CGGCCTTCGACCAGCAGCAGAGACGGCTCGGCGACGATCTTGAGCACCAGGCTCAACGCTATGAACGCTACGATTACCCAGGCCGCTACAAGACCAGCGC AGTCGGCAAAGCCTTCACCGAAAACCGCCTGCTGGGCCATCGCCGCGATGCCCGTGTAGCGACGGTGCAAGGGGATGATCCGCGGCTGATTCCGGGTTTT TCCTTCCAGCTGACCGGGCACCCCCGCAGCGATTTCAACCGCTGGTGGCGCTCGGTACGTATTACCCACAAAGGGATACAGCACGCCAGCCAGCAAGAAG AAGCGGCTGGCGCCGAGATGGGCGTGAGTTACGACTTCAGCGCCCAGATCATTGCCGAGGACTGCGAATGGCGGCCGATGCCACTGCCCAAGCCAGTCAT CGACGGGCCGCAGGTGGCCACGGTGGTGGGTCCGGAAGGCGAGGAAATCCATACCGATGAATATGGCCGGGTGAAGATTCAGTTCCCCTGGGACCGGGAG GGACAAAACAACGGCTTCAGTTCCTGCTGGATTCGGGTTTCACAGAACTGGGCGGGGGCTGAGTGGGGCCATATGGCGATCCCGCGCATTGGCCAGGAAG TCATAGTCGATTATCTGGATGGCGACTGTGACCAGCCGATCATCACGGGCCGTACCTACCGGGCCAGCCATATGCCGCCCTACCGCCTGCCGGATCACAA GATCCTCAGCACCATCAAGAGCAAGGAACACAAGGGCAGCCGGGCCAGCGAACTGCGCATCGATGACACTACACAGCAGATCAGTGCGGCCTTGATGAGC GACCACGGCAGCAGCGCCTTGCACCTGGGGTACCTGACCCATCCCCGGCCCGAAGGTGGCGCGCCGCGTGGCGAGGGTTTTGAGCTGCGCACCGACGAGC GCGGCGCCCTGCGCGCGGCCAAGGGGCTGCTGCTCAGCACCGAGGCGCAACTGCAGGCCAGTGCCGGGCAACTGCAGCGTGGCGCGGCGATTCAAGTGCT GGAGGCCGCGCTGCAACTGGCCAAGGGGCTGGGTGACTATGCGCAAGACCATCAAGGTGTCGGGCACGACACCGAGTCACAGAAAACCCTCAGCGAGGCG GTACGCGACCTGGGGCATGGCGCCAACGACGAGTCGCAGCAGAGCAACGGCGGCAACCCGGCCATTGCCCTGAGTGGCCAGGCGGGTATCGCCGCGGTGT CTCCCAGGAGCGTCACCCTGGCGGCGGGCGAGCATATTGACAGCGTCGCCCAGCAGAACCAGCAGCTCACCTCGGGGCAGAAATTCGTGGTCAATGCTGG TACCGACCTTGGCCTGTTCGCCCAGAGCGGCGAGATGCGCCACATCACCCACCAGGGGCTGATGTTGCTGCAGGCGCAACAGAACAGCATTCGCCTGGAG GCGGATCAGAGCGTGGAAGTCAGTGCGGGCAAGCAGCACGTGCTGGTCTCCGCCAAGGAGCACATCACCCTGATGTGCGGCGGCGCCTACCTGACGCTCA AGGGCGGCAACATCGAGCTGGGCATGCCGGGGAATTTTACGGTCAAGGCGGCTAAACACAGCCTCGTCGGCGGGGCCAGCCTTGCGGCGCAGTTGCCGAA CTTCAACGTGGGCGATACCCAGCGGCGCTTCATGCTCAAGCAGATCGATGGCCAGTCGGCCATGCCCAACGTGCCTTACAAGATCACCCTGGCCAATGGT GAAATTGTCGAAGGCGTGACCGATGCACAAGGCGCGACGCAGCTGTTGCAGAAAGATGCCATGAGTATTGCCAATGTGAGCATGAAGCGTTCGAGCACGC CATTGGTTGCGGCCGCTGCGGCAGCGGGAGTGGCCGCTCTTGTGGCCAAGGCTTTCTCCGAACCTGATAGTGAAAAAGGGCGGGCCCTGACGGAGGGAGA GATCACTCTGGCGAAACGTGTGTTTGGCGACTCTATCGATTACGACAAGGTGCGCTTGCGTGATGAGGACTATGTGCCGTGGCAGGGCAAGAACTACGTA ATGGCGCCCAACGGGCACATCTACTTCGGGCAGGACTTGCGAGGTGTGGCCGACTGGAGCCTGCTGCCGGCCAATGACCGGGGCTTGTTCATTCACGAAA TGACCCACGTATGGCAACACCAGCACGGCGTAAATGTGCTGTTGGTGGGCGCCTACCAGCAGGCAAAGCAGTTCCTGATAGGAGACCAGTACCAGTATCA GGTGGAGCCTGGGAAGACGCTCAAGGACTACAACATCGAGCAGCAAGGAGACATTGTGCGTGATTACTACCAAGGCCTGGACTCTGGAAACACTCAGGTA CTGACGAAGCTCAAGCCTGTATTGGGCAATTTTCCGGCGGGGTACTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ATCATGAAAAGTCTGATTCGTACTGTGTTGTGTGCTGTGTTGTTGGTGCAGTCTCCAGCATGGGCCGTGTCCAAGCGCCCTCCGAATGTTCCCGTGACGA TGGAGTCTGGTCATCCGGTAGCTGATCTTCGACTTCTGCTGGCCGATACCAACAACCTTGAAATCAATCAAGTATTTCTTTGTCGTCGGACTGGAGCCCA ATGCTACGAAACCCTATGGGACATTGACCTTCCCGACGGTTGGATTCAACCCCGAATAGTGTTGTTAGGGGACTACCCAGGTGCGGTTGTCAGAACGATG AACCCCGAAGCGTTGCAGCCAGGAGGCAGTTACAACCTTGGTATTTACTTCAATGAGCGCAGTCGCTGGCACAAACAGACGGTCTCTAGCACCTTCTTGG AGTTTTGCGTGATAGAAGACGACGGCGTGTGGCAAATCCAGGATCCGGCGCTTTGCCTGGCTCGAAGAAATGCCGAAGAGCGGCAATGACCGCCCTGAAT
Amino Acid Sequence
>type IV secretion protein Rhs
MRQRDLQFTFSVLTAQVAFEVVEFTLEEALSEPYRLTLELASENAAIDFGQILDQPALLTLWQGGMQVRHVHGLVTRFTQGKTGFRRTRYSLLVEPQLAR LALSSDWRIFQQKTVPDILKSLLDEHGVLAYQPYIHTEHAPREYCVQAGDTDLYLFDRLSTEEGLFYFFKHDANSHTLVQGDKLYVQERIPGAPVLYTTQ PAGDATQPVLYGFSYTETVCTAEQTQRDYSFKRPAFDQQQRRLGDDLEHQAQRYERYDYPGRYKTSAVGKAFTENRLLGHRRDARVATVQGDDPRLIPGF SFQLTGHPRSDFNRWWRSVRITHKGIQHASQQEEAAGAEMGVSYDFSAQIIAEDCEWRPMPLPKPVIDGPQVATVVGPEGEEIHTDEYGRVKIQFPWDRE GQNNGFSSCWIRVSQNWAGAEWGHMAIPRIGQEVIVDYLDGDCDQPIITGRTYRASHMPPYRLPDHKILSTIKSKEHKGSRASELRIDDTTQQISAALMS DHGSSALHLGYLTHPRPEGGAPRGEGFELRTDERGALRAAKGLLLSTEAQLQASAGQLQRGAAIQVLEAALQLAKGLGDYAQDHQGVGHDTESQKTLSEA VRDLGHGANDESQQSNGGNPAIALSGQAGIAAVSPRSVTLAAGEHIDSVAQQNQQLTSGQKFVVNAGTDLGLFAQSGEMRHITHQGLMLLQAQQNSIRLE ADQSVEVSAGKQHVLVSAKEHITLMCGGAYLTLKGGNIELGMPGNFTVKAAKHSLVGGASLAAQLPNFNVGDTQRRFMLKQIDGQSAMPNVPYKITLANG EIVEGVTDAQGATQLLQKDAMSIANVSMKRSSTPLVAAAAAAGVAALVAKAFSEPDSEKGRALTEGEITLAKRVFGDSIDYDKVRLRDEDYVPWQGKNYV MAPNGHIYFGQDLRGVADWSLLPANDRGLFIHEMTHVWQHQHGVNVLLVGAYQQAKQFLIGDQYQYQVEPGKTLKDYNIEQQGDIVRDYYQGLDSGNTQV LTKLKPVLGNFPAGY
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site