Pseudomonas sp. PH1b, U873_RS0119460

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF13296	Putative type VI secretion system Rhs element Vgr	IPR028244	Putative type VI secretion system, Rhs element associated Vgr domain	475	581	1.5E-32
PANTHER	PTHR32305	-	-	-	23	724	6.5E-110
Pfam	PF10106	Uncharacterized protein conserved in bacteria (DUF2345)	IPR018769	Type VI secretion system spike protein VgrG2, domain of unknown function DUF2345	614	759	1.6E-46
NCBIfam	TIGR01646	JCVI: type VI secretion system tip protein VgrG	IPR006533	Type VI secretion system, RhsGE-associated Vgr protein	20	502	2.4E-125
Gene3D	G3DSA:4.10.220.110	-	-	-	221	284	7.8E-81
Pfam	PF04717	Type VI secretion system/phage-baseplate injector OB domain	IPR006531	Gp5/Type VI secretion system Vgr protein, OB-fold domain	384	453	5.2E-13
SUPERFAMILY	SSF69279	Phage tail proteins	-	-	193	365	1.22E-28
Gene3D	G3DSA:2.40.50.230	-	IPR037026	Vgr protein, OB-fold domain superfamily	358	456	3.1E-40
SUPERFAMILY	SSF69255	gp5 N-terminal domain-like	-	-	364	451	2.43E-33
SUPERFAMILY	SSF69349	Phage fibre proteins	-	-	442	493	6.43E-8
Gene3D	G3DSA:3.55.50.10	-	-	-	96	187	7.8E-81
SUPERFAMILY	SSF69279	Phage tail proteins	-	-	9	182	2.15E-49
Pfam	PF05954	Phage tail baseplate hub (GPD)	-	-	27	327	3.2E-75
NCBIfam	TIGR03361	JCVI: type VI secretion system tip protein TssI/VgrG N-terminal domain	IPR017847	Type VI secretion system, RhsGE-associated Vgr family subset	8	493	0.0
Gene3D	G3DSA:2.30.110.50	-	-	-	21	329	7.8E-81

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.