Strain | Pseudomonas sp. PH1b Contig8, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CTGCCGGGGCAGCCTCTCGGAGCCGCTGCGGGGATTTCCCGGATCGGTAGACGGATCAGGGTGAGCCGGTCCGTTGCTGCCGGTTCCCCTAGGGTATGGC GTAGATCTTGAACAACTGCCCGGGGTATTGCCGCCAGGTCTGCGCGGCGCTGCAGCAGGTTCGGCCCCCTGCCCCCTGTTGTCCGCAGGGCGGGCAAAAA ATCAAACCTTTGCCTGGACCGGGGTTCCATCGTCAGGCGCCCCCCAGCGTCGCCCCTACTTCGAACAGGCCATTGTCCGGGCCTTGCTCAATCGCTGAGC GCTCCTGCGTCCCGGGCGGGTGATGTGCCGAACCGCGCCTTCTCCCGCCAATGGCCGGTGATTCTTATCGGCCACGCCTGCGACGGCCAGCGCGGCCGAC ACAGGCCAGGCAAGCAGATTGAACTCCGCCCTCCCCGGACTTTCCCAAGCAATAGAAGCCGGTTCGCCCAACGCTAGACAACGCTCTCTGGAGTATCTCA
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DNA Sequence for Gene |
>U873_RS0114550
ATGGCCCAGCCCCTCGATGAGCACCCGCACCCGCACCCACACGACGTCGACGCCACGCCGCAGCCCGCCAGCAAGTCGCTTCGCGGTGGCCCGGCAAAGG CATTGCAGTACTGCATCCAGCGGCATGACGCGAGCCACCTGCACTATGACTTTCGCCTGGAGCTGGACGGTGCCCTGAAGAGCTGGGCGATTCCCAAGGG GCCGTCCCTGGACCCCAGGGTCCGGCGTCTGGCAGTGCATGTCGAGGATCATTCGCTGGACTACGTCGATTTCGAAGGGCGCATCCCCGAAGGTCATTAC GGCGCGGGCGAGGTGATTGTCTGGGACCGTGGGGTCTGGATTCCCGAGGGCGACTCGCATCAGGGGTATGCCAACGGCAGGCTGCGCTTTCGCCTGCAAG GGGCAAAGCTTCTGGGCAACTGGAGCTTGTTCCGGACCCGCATGGCCGGCAACCGGGAGCAGTGGCTGCTGGTCAAGTCTGCCGATCCCCAGGCCCGCCA GCAGGAAGACTACGACATTCTGCAGGCGCGCCCCCACAGCGTGCTCAGCGAGCGCACCTGGCTGGCGCCCAATAGCCAGTCGTCCAGACCGCAGTCCAGG AGCGTCGGCCGATGGAACCTGGTCGGCCCGCTCTGGGCCCGGCTCGTGCGGCAGTGGTACCTGGTGGCCCTGAACCTGCGCCGCTTGCAAAAAAGCACCG CGAATGAGCAGAAGCCGATCTTGGAGTTGCCCCGATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
ACCCAGCCACCCTGTCCTTCCTCCAGATTTTCGCCCAGCGGCCCCAGGGCCTGGACCTGGACCCGCAATTGCAGCGCTGTCTTGATCAGTGCAGGGCCTG CGGCCTCGATCAACTGCCCCTGCCCGGCCAGGGCCATACCCTGCAGCGCTGGCGGGTATTGGCCGAGGTCGCCGGTGCCGACCTGGCGCTGGCCAAGCTG TTCGAAGGCCATACCGATGCCCTGGCCATCATCGATGAGTGCGCTGCCAGCCATCTGGACATCACCGGCAGTTGGGGCGTCTGGGCAGCCGAGCCGCCCA GCGCACGAGTGCGCATCGTCGCCCGCGACGGTCACCAGGTGCGCCTGCAAGGGCGCAAGGCCTGGTGCTCGGGGGCGCTGCAGCTCGATTGTGCCCTGGT CACCGCCTGGGATGAGCAACAGTGCCCACAGTTGGTTGCGGTCAGGCTGGACCAGCCTTCCCTGCGCACTTTTGAGCAAGGCTGGCAGGCCGTGGGCATG
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Amino Acid Sequence |
>hypothetical protein
MAQPLDEHPHPHPHDVDATPQPASKSLRGGPAKALQYCIQRHDASHLHYDFRLELDGALKSWAIPKGPSLDPRVRRLAVHVEDHSLDYVDFEGRIPEGHY GAGEVIVWDRGVWIPEGDSHQGYANGRLRFRLQGAKLLGNWSLFRTRMAGNREQWLLVKSADPQARQQEDYDILQARPHSVLSERTWLAPNSQSSRPQSR SVGRWNLVGPLWARLVRQWYLVALNLRRLQKSTANEQKPILELPR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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