Pseudomonas sp. PH1b, U873_RS0114550
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF13298 | DNA polymerase Ligase (LigD) | IPR014144 | DNA ligase D, 3'-phosphoesterase domain | 40 | 143 | 3.2E-38 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 1 | 15 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 1 | 30 | - |
| NCBIfam | TIGR02777 | JCVI: DNA ligase D, 3'-phosphoesterase domain | IPR014144 | DNA ligase D, 3'-phosphoesterase domain | 14 | 162 | 6.0E-63 |
| PANTHER | PTHR39465 | DNA LIGASE D, 3'-PHOSPHOESTERASE DOMAIN | - | - | 36 | 113 | 1.6E-33 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.