Pseudomonas sp. PH1b, U873_RS0110515

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0030288 outer membrane-bounded periplasmic space
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF006470
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR33376
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.190.170 - IPR038404 TRAP transporter solute receptor DctP superfamily 29 332 1.8E-92
CDD cd13674 PBP2_TRAP_SBP_like_1 - - 31 326 0.0
NCBIfam TIGR00787 JCVI: DctP family TRAP transporter solute-binding subunit IPR004682 TRAP transporter solute receptor, DctP family 34 278 4.6E-74
PIRSF PIRSF006470 DctB IPR004682 TRAP transporter solute receptor, DctP family 1 332 1.5E-124
NCBIfam NF037995 NCBIFAM: TRAP transporter substrate-binding protein DctP - - 33 303 6.6E-52
Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 IPR018389 TRAP transporter solute receptor DctP 34 315 7.3E-105
FunFam G3DSA:3.40.190.170:FF:000001 TRAP dicarboxylate transporter, DctP subunit - - 29 330 1.5E-123
PANTHER PTHR33376 - IPR018389 TRAP transporter solute receptor DctP 4 330 6.0E-123
Coils Coil Coil - - 270 290 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.