Pseudomonas sp. PH1b, U873_RS0108960

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. PH1b Contig4, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CTGGATCAACTTTCTTGAAGTGCCGTCCCTGGCGCCAGTGGGCAGCAACGTCCTGCGGATGGCCTATCGCATGCGCATGAAGCTGCTGTATCGCCCCCAG GGCCTGGCGGGCACGGCAGCCGAGGCCGTGGGGCGGCTGCGTTGGAGCCTGAGCGGCGCAAGTGCGCCTGCAACGACGCTGCGAGCCAGCAACCCGACAC CGTACTACGTGTCCTTCGCCCAGTTGACCCTGGGCAGCGGAGCGCGAGCGAACACCTGGCAGGGGATCACGGTGGAGCCCTTTGGCTCGACGGATCTTCC TCTGGCCGAGGTGCAAGGGAAGGTCCCGGATCAGACGGTAATTCATTACCAAGTGGCAACAGACAGCGGGGAGACGCTGAGTGGAAGTGCGCGAATACAA GACTGAAGTTGCCTTGGGCAAGTCATTGAGCAACCCGCCTGCGAGGTGTCTTGAACGGCCCCGGCAGTGTTTGCCCTGGGGCTGCCTGAGCTTGCTGCTG
DNA Sequence for Gene
>U873_RS0108960
ATGCTGCCCGGGGTGGCGGCTGCCGCGTTGCCCAACGCCGGGCAGGCGATGCGTGACCTCGAGGCCACGCAACCGGCCTTGCCGGAGCCTCCGGCGCCGG AACTGGACCTGCCGGCGAAGCCGCCGAGCGCCCCTGCCCAGGCTCCGGATACCTCCGGCATCCGCCTGCAGGTCAACGATTTCGTGATCGTCGGCAATCA GGTGTTCAGCAACGAGACGCTGCAGGCCGAGTTGGCGGACCTCAAGGGTCAGGAGCTGGATCTGAACCAGCTGCGCGCGGCTGCCGAGCGTCTGACCACC TATTACCAGAACCAGGGCTACATGCTGGCCCGGGCCTTCCTGCCGGCCCAGGACATCGAGGACGGCGTGGTGCGTATCGAGGTCATGGAAGGCCGTTACG GCCGTATTCAAGTGAACAACCAGTCCCGGGCTCTGAACTCGGTGATCAGCGGCCCCCTGTCGTCGCTGCAAAGCGATACCGCAGTGCGCAGTGACGATCT TGAGCGCAGCCTGCTGCTGTTGAGCGACCTTCCCGGGGTTCGGGTCAAGGGCACCCTGAGTGCCGGTGAGCAGCGGGGCACCACCGACCTGCTGGTCAAT GCGCAGCCCGGGCCCTGGGCCAGCGGCACCCTGGAAGCCGACAACTTCGGCGGCTACTACACCGGCGAATACCGCCTGGGGGGCAGCCTCAACCTCAACA ATCCCTTGCGTCTGGGCGATCAGCTGAACCTGCGGGTGCTGGGCAGCGATGAGGATCAGCGCTACTACCGCGCCGCCTACAAACTCCCGCTAGGTCCCTG GTCCACCAGCCTGGGCGTGGCCTATTCGCGGATGAAGTACGAGTTGGGCCGGGACTTCGAGCTGCTGGAGGCCAACGGCCAGGCCAGCATCGGCAGTGTC TTCATCACTCAACCGCTGATCCGCAGCCGCACCTTCGATCTCAGCGCCCAATTGCAGTACGAGGACAAGCGGCTGCGGGACGACATCGACCTGTTCGAAA TCAGCAGCCAGAAGCATGTGGAGCTCTGGAGCCTGAGCCTCAACGGCAACTCCCAGGACAGCGTGCTCGGCGGCGGGCAGAACTTCTTCTACCTCATCTA CGGCAGTGGCCGGTTGAGCATCGACGACCCGATGGACCAGTGGCGCGACCACTTCACGGCCGGCACCAACGGTGGCTTTCAGAAGCTCAACCTGAATGCC GCGCGCCTGCAGTACCTGAGCCCGCGCTTTCAGCTCTACGGCCAGTTCAACGGCCAATGGTCTTCGACCAACCTGGACAGCTCGGAAAAATTCGGCATCG GCGGCCCCTTCGATGTGCGCGCCTACCCCCAAGGCACCAGCAGTGGCGACCAGGGCTGGCAAGCGAGCCTGGAACTGCGCTTTCTCCTGGCCCCGCGTTG GCAGCTCAAGGCGTTTGTCGATCACGGCGCGGTGCAGATCAACAAACGCCCCTGGATTCACGATGAGAACCGCCGCCAGCTTTCGGGCGCCGGTGTGGGT GCCAGTTGGAGCGGTCCTTCGCAACAGATCAGCGTGACCAGTGCCTGGGCCCTGGACAACAACCAGGAAGGCAGCGGTCCCGAGCGTACGCCGAGGATCT GGGCAAGCGCGACTCAGTATTTCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AGGCGCATGTGCGCTTCGGATGTAGTGCCGCCCTGCAAAAGTTGCAAGGCGTTAATCAGTAAAATAAGGAGTCAACGTGAATAAGGTTTATGCATTGGTA TGGAACCAGGCTCAGGGTTGCTGGAGTGTGGCCGACGAAGGGGCGCGGCGCCGTCGGCGTTCAGGAACCCGCAAAGGCCTGGTGGTGATGGTTGCCGGGT TGCTGGGCATAGGCGCTTTGCCTATGGCCTTCGCGCTGCCGACTGGAGGAACCATAGTCTCCGGACAGGCAGACATCCTGACGTTCGAGAATGGCAAGCA GATGTCGATCAACCAGCACTCCGACAAGCTGATCACCAACTGGAACGACTTCAGCGTGAACCGCGGCCAGACGGTGACCTTCAGCCAGCCGACCAAGACC TCGGTCGCCCTGAACCGGGTGATCGGCGTCAACGGCAGTAATATCCAGGGGCAAATCAATGCCAACGGCCGGGTGTTCCTGATCAACCCCAACGGCGTGG
Amino Acid Sequence
>membrane protein
MLPGVAAAALPNAGQAMRDLEATQPALPEPPAPELDLPAKPPSAPAQAPDTSGIRLQVNDFVIVGNQVFSNETLQAELADLKGQELDLNQLRAAAERLTT YYQNQGYMLARAFLPAQDIEDGVVRIEVMEGRYGRIQVNNQSRALNSVISGPLSSLQSDTAVRSDDLERSLLLLSDLPGVRVKGTLSAGEQRGTTDLLVN AQPGPWASGTLEADNFGGYYTGEYRLGGSLNLNNPLRLGDQLNLRVLGSDEDQRYYRAAYKLPLGPWSTSLGVAYSRMKYELGRDFELLEANGQASIGSV FITQPLIRSRTFDLSAQLQYEDKRLRDDIDLFEISSQKHVELWSLSLNGNSQDSVLGGGQNFFYLIYGSGRLSIDDPMDQWRDHFTAGTNGGFQKLNLNA ARLQYLSPRFQLYGQFNGQWSSTNLDSSEKFGIGGPFDVRAYPQGTSSGDQGWQASLELRFLLAPRWQLKAFVDHGAVQINKRPWIHDENRRQLSGAGVG ASWSGPSQQISVTSAWALDNNQEGSGPERTPRIWASATQYF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site