Pseudomonas putida S16, PPS_4526

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0009274 peptidoglycan-based cell wall
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02071
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0046677 response to antibiotic
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02071
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008233 peptidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02071
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008955 peptidoglycan glycosyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02071
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009252 peptidoglycan biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02071
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008658 penicillin binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00905
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
MetaCyc peptidoglycan biosynthesis V (β-lactam resistance) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc peptidoglycan biosynthesis II (staphylococci) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc peptidoglycan biosynthesis IV (Enterococcus faecium) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc peptidoglycan biosynthesis III (mycobacteria) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG ppt00550 Peptidoglycan biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR02071 JCVI: penicillin-binding protein 1B IPR011813 Penicillin-binding protein 1B 1 724 0.0
Gene3D G3DSA:3.30.2060.10 - - - 42 130 0.0
PIRSF PIRSF002799 PBP1b IPR011813 Penicillin-binding protein 1B 1 748 0.0
Gene3D G3DSA:1.10.3810.10 - IPR036950 Penicillin binding protein transglycosylase domain 131 334 0.0
Gene3D G3DSA:3.40.710.10 - IPR012338 Beta-lactamase/transpeptidase-like 34 698 0.0
SUPERFAMILY SSF53955 Lysozyme-like IPR023346 Lysozyme-like domain superfamily 139 332 1.15E-66
FunFam G3DSA:1.10.3810.10:FF:000002 Penicillin-binding protein 1B - - 131 334 3.4E-73
SUPERFAMILY SSF56601 beta-lactamase/transpeptidase-like IPR012338 Beta-lactamase/transpeptidase-like 292 731 1.27E-117
Pfam PF00912 Transglycosylase IPR001264 Glycosyl transferase, family 51 141 308 1.6E-56
PANTHER PTHR32282 BINDING PROTEIN TRANSPEPTIDASE, PUTATIVE-RELATED - - 135 712 0.0
Pfam PF14814 Bifunctional transglycosylase second domain IPR028166 Bifunctional transglycosylase second domain 44 127 2.5E-24
Pfam PF00905 Penicillin binding protein transpeptidase domain IPR001460 Penicillin-binding protein, transpeptidase 404 635 1.4E-18

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.