Pseudomonas putida S16, PPS_4319
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida S16 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTGCCGGAAAAATAGCGCGCCCGCTGCGTAAAGGCGCTGTTCGGCACTGAAAGCCAGGCGCTGACATACCCGCTATCAACCAATCATCGACAGCCGATGG CGCGCCGTGCGCCGTCGGGTGGTAGTTGCCGTTCATCGCAGGGACCCGTCCGCTTCTCCAGCGGCGTGCAAATTAGACCCGCCCCACAGACGCTACTCCA TTTGGAGGAATGTGCCATGCCTGAGGGGGCGGGCTTGCCCGCGAAGCGGTCGACACGGTTTTCATCCACGCCCCACCCGCAAAACGCTTGCTCAGCCCGC ATACCACGCTAACATCAAACCTCTGGAAGATTGTCACGGCGCATTCAAGTTGCGGGGTCAGGCAACCGATACACTTCTGATGGTCGGCCGATAGTGTATC GTCATCGTTGATGGCAAAATGATGCCATGCGCATGGATTAAGGAAACCCCCATTGAAGCTGGAATTGCGGAACAGCTTGTCGGTCAAGTTGCTCAGGGTC
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| DNA Sequence for Gene |
>PPS_4319
GTGCTGCTGTCGGCGCTAGCGGTCGGTGTCGTGCTCAGCTGTGCGCAAATCGTCTACGACACCTACAAGACCCGCCAAGCCGTGAACAGCGATGCCCAAC GCATCCTCGACATGTTCCGCGACCCCTCGACCCAGGCGGTATATAGCCTCGACCGCGAAATGGGCATGCAGGTGATTGAAGGCCTGTTCCAGGACGAATC GGTACGCATGGCCTCCATTGGCCACCCCAACGAAACCATGCTCGCAGAAAAGTCCCGCCCGCTGCAGGACATGTCCATGCGCTGGCTGACCGACCTGATC CTCGGCCAGGAACGTACCTACAGCACGCAACTGGTCGGCCGCGGCCCCTACAGCGAATATTACGGCGACCTGAGCATCACCCTCGACACCTCGTCCTACG GCGAAGATTTCCTGATCAACGCCGTGATCATCTTCATTTCCGGCGTGCTGCGGGCCCTGGCCATGGGCCTGGTGCTGTATCTGGTCTACCACTGGCTGCT GACCAAACCGCTGTCGAAGATCATCGAGCACCTCACCCAGATCAACCCCGACCGCCCAAGCCAGCACCAGCTGCCGCTGCTCAAGGGCCACGAGAAGAAC GAGCTGGGCCTGTGGGTAAATACCGCCAACCAGCTGCTGGCCTCGATCGAGCGCAACACCCACCTGCGTCACGAGGCGGAAAACAGCCTGCAACGCATGG CCCAGTATGACTTCCTCACCGGCCTGCCCAACCGTCAGCAACTGCAGCAGCAACTGGACAAGATCCTCGTCGACGGTGGCCGCCTGCAACACCGCGTGGC GGTGCTATGCGTAGGCCTGGACGACTTCAAGGGCATCAACGAGCAGTTCAGCTACCAGGTCGGCGACCAGTTGCTGCTGGCCCTGGCCGACCGCCTGCGC GCCCACAGCGGCCGACTGGGCGCCCTGGCACGCCTGGGTGGTGACCAGTTCGCCCTGGTGCAGGCCAATATCGAGCAGCCCTACGAGGCCGCCGAACTGG CGCAGAGTATCCTCGACGACCTGGAAGTGCCGTTCGACCTCGACCACCACCAGCAGATCCGCCTGCGCGCCACCATCGGCATCACCCTGTTCCCGGAAGA CGGCGACAGCACCGAGAAGCTGCTGCAGAAAGCCGAACAGACCATGACCTTGGCCAAGGCCCGTTCGCGCAACCGCTACCAGTTCTACATCGCCAGCGTC GACAGCGAGATGCGCCGCCGTCGCGAACTGGAAAAGGACCTGCGCGAAGCCCTGCCACGCAACCAGCTGTACCTGGTGTATCAGCCACAGATCAGCTACC GCGACCACCGCGTGGTCGGTGTCGAAGCACTGCTGCGCTGGCAACATCCGGAGCTGGGCATGGTGCCCCCGGACCAGTTCATCCCCCTGGCCGAACAGAA CGGCAGCATCATCGGCATCGGCGAATGGGTGCTCGACCAGGCCTGCCGGCAATTGCGCGAATGGCACGACATGGGCTTCAGCGACCTGCGCATGGCGGTC AACCTGTCCACCGTGCAGCTGCACCACAACGAGCTGCCGCGGGTGGTCAACAACCTGCTGCAGGCTTACCGCCTGCCACCACGCAGCCTGGAGCTGGAAG TCACCGAGACCGGCCTGATGGAAGACATCAGCACCGCTGCCCAGCACCTGCTGAGCCTGCGCCGCTCCGGAGCACTGATTGCCATCGACGACTTCGGCAC CGGCTACTCGTCGCTCAGCTACCTGAAATCGCTGCCTCTGGACAAGATCAAGATCGACAAGAGCTTCGTCCAGGACCTGCTGGACGACGATGACGACGCC ACCATCGTCCGCGCCATCATCCAGCTGGGCAAGAGCCTGGGGATGCAGGTAATCGCCGAAGGCGTGGAAACCGCCGAACAGGAAACCTACATCGTCGCCC AGGGCTGCCACGAGGGCCAGGGCTACCACTACAGCAAGCCGCTGTCGGCCCGTGAGCTGACCAACTTCCTCAAGCAGGCACAGCGAAACCAGGTTTCGAT GTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCGCCTGCCCGATTACAGCCCGTGACCGGCATTTACACGAATTGCATGCCCGCCCCTTTACAGCAAATGCAAATCTTTCGCATGATGTTGTCGTTTCGC GTGCCACGGCGCACCGTCCACCCCTTGGTCCAACCACACGACGCAGGAAACCAATAATGATTCGAATGCCTCTGGCCTCCGCCAGTCTGCTGGCCATTGC CATCGCTCTCGCCGGTTGCGGTGAAGGCAAGGACGACAAGGCCGCCGCGCCGCAAGCCCAGGCACCTGCTGCCGCCAGCACCACCGCTGCAGCGCCCGGG GCTGTCGACGAAGCCGCCGGCAAAGCCGTGGTCAAGCATTACGCCGAGCTGGTCTACGCCGTGTACAGCGACTCGCTGAGCACCGCCAAGACCCTGCAGA CCGCAGTCGACGCGTTCCTGGCCAAGCCGAACGACGAAACTCTGAAAGCAGCCAGGGAAGCATGGGTCGCCTCGCGCGTACCGTACCTGCAGAGCGAAGT
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| Amino Acid Sequence |
>diguanylate cyclase/phosphodiesterase
MLLSALAVGVVLSCAQIVYDTYKTRQAVNSDAQRILDMFRDPSTQAVYSLDREMGMQVIEGLFQDESVRMASIGHPNETMLAEKSRPLQDMSMRWLTDLI LGQERTYSTQLVGRGPYSEYYGDLSITLDTSSYGEDFLINAVIIFISGVLRALAMGLVLYLVYHWLLTKPLSKIIEHLTQINPDRPSQHQLPLLKGHEKN ELGLWVNTANQLLASIERNTHLRHEAENSLQRMAQYDFLTGLPNRQQLQQQLDKILVDGGRLQHRVAVLCVGLDDFKGINEQFSYQVGDQLLLALADRLR AHSGRLGALARLGGDQFALVQANIEQPYEAAELAQSILDDLEVPFDLDHHQQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKARSRNRYQFYIASV DSEMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRVVGVEALLRWQHPELGMVPPDQFIPLAEQNGSIIGIGEWVLDQACRQLREWHDMGFSDLRMAV NLSTVQLHHNELPRVVNNLLQAYRLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKIDKSFVQDLLDDDDDA TIVRAIIQLGKSLGMQVIAEGVETAEQETYIVAQGCHEGQGYHYSKPLSARELTNFLKQAQRNQVSMF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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