Pseudomonas sp. RIT357, BW43_RS20895
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. RIT357 contigs14, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGATGCGCTCACAGGGTTGTTCAAGCGCGTGCCGAAGCGGCCGTGGTATGCGCGGCATTTGAAGGTGAAGACGCGGGAAGCGTGACCGCTTGTCGATGAA ACTACGATTTTTACGATGTAAAACGGTAGCTGCGGGGTATTAATCTGCGGTTTTCGTTTTCAGGTAAGCGCAAAAGCCTGATGGCTAAGCGTCCTGCGTT ACCTCTCTGACAAATTGGTTTATCCATTCCTATCTTTTTTCCGATGTGCTTGTAGGTTTGAAGATTTCGAGTGGGAGAAAAAACCATACGTTTCTTTTTT TATTCTTTTTTCCTGCTCGGTACCTGATCTTTTCCCATGTTTTTAGGAAAAATCTGACGGACTTTTTAACGCTGCGTGACAGATGTAGGAATACCCTTCG CAATCCTGAGATTTTTGTAACCTTTCTGCTTTTCCTTTACCAATTCAGCCTCGGCAAGCTGCGTGCTCTTTCCATATGAGTACCAGTGAGGGTGAAAAGG
|
|
| DNA Sequence for Gene |
>BW43_RS20895
ATGTCAGCCGTTTTACGACCCGCGTTACTTGGCGTGGCGCTGCTCTGCGGTCCACTTCTTGCCGCGGCGCAAACCTTACCGGGCGACAGAGAGCTGGCCC GGGAAAGACAACAGCAAGTGCTGGAAGAGCAGCGTCGACGTCTGGACGAACTGCAAAACCTTCCTGGAAAAGCCGCAGTACGCACCGCACCTGCTCTGGT TGAAGACGGCCAGTGCGTGACCCTCACGCGCATCACCGTTGAAGGTGCCACCTTGCTCTCCGAGGCAAAGCGCGAGGCCTTGCTTGCTCCCTGGTCGGGG CGCTGCCTTGGCGTTCCTCAGCTAAACGAGGTGCTCAAAAGCCTCACCGACCATTACCTGCGCCGTGGCTACGTCACCACCCGGGCGTACCTGCCGCAGC AAGACCTGAAAAACGGCGAGCTTAAAATCATCGTGGTGGAAGGGCGCCTCGAAGGCCTCGACAGCTCATCACTGGCCAGTCCCGCCGAGTCAGCCATGAC CTTTCCTGGCAGCGTCGGTGACGTGCTGGATCTACGCGAGCTGGAGCAATGGGTCGATCAGCTGGGACGCTTGCCCTCGCGCCAGCCGCAGCTTGAGTTG ATGCCGGGCCAAGCGGTGGGCGGTAGCCGTGTCGCACTCAAGGGCGAACGCTTCAAGCCCTGGCGCGTCTCGGCTAACCGCAACAACCATGGAGACGAAA GCACCGGCCGCCAGCAGGCCGGTCTTGGCCTTGAATGGGACAGCCCTTTGGGGCTGGCGGACCAACTGAGCCTGCGCGCCAACCGTGACACGGTCAGCGA CCATTGGCGACATTCCGAAAGCCAAAGCCTGTTCTACAGCTTGCCGTATGGCTGGTGGACCTTCAATTTCAGCCACAGCCAAAGCTATTACCGCACCCGA AATGATGCGTCCGGCTTTGCCTTCGCGTTGTCCGGCGACACCTCCACCCAGCAACTTCGCGCCGAACGCGTGCTACACCGCGACAACCTCGGCAAGACCG CGCTCAACATCGGCCTGAGCCACCTGCGTACACGTAACTACCTGGAAGACGCGTTGTTGCGCACGTCCAGCCATCGCATCACTGAGCGCCAGTTGGGGTT CAACCATGGGCGTCGCATCGGCAATGCGTTTTTCAACCTTGATGCCGGTTGGCAGCAAGGCATCGGCGCGTTGGACGCCCAGCGCGACCTCTCCACACGC TCCGGCGCCCCCACCTCCCGCTATCAGAAATACAGCCTGACCCTCAGTTACCTGCAGTCCTTTCGCTGGCTGGACCAGCACTGGAGCGTCGACAGCCTGG CCACCGGCCAACGTGCCGAAGACGAACTCTATGGACCACAACGCCTCAGCGTCGGCGGCTTTGGCGCGGTGCGCGGGTTCAGCGAACAGAATCTCTCGGG CAACAGCGGCGGCTACTGGCGCAGCCAACTGCGCTGGCGCCACGCCGTGGGTTGGGACGCCTTGCGCCCGTGGGTGCACGAAGTGGGCGTCGGCTTCGGC TACGACGTTGGGGTTATTCGCCGTGGGCCGCACAACCCCGACGTGGCCGGGCGCCTCACTGGCAATGCCTGGGAACTCAGCGCGCGCGGCCGGCACCTTG CCGCATCGCTGGTATTCGCCCGTGCTCTGGAGCGCCCGGCCGTGATCGAGCACCGCGAGCACCCGATGTACGCCCGAATCGACCTCTTCTTCTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CAACAAGGAACCTTGCCTATGGACGCGCGCAGCCCCTTTAACCAGTGCCTGGCCCTGAGCCTCGCAGGTATTTTGTTTCTCAACCCGATCGTCTCGGCTG CCGCGCAACTGAGCGTCGACCCCGCCAGCCCCGGCACCAGCATCGATCAAGCGCCCAATGGCGTGCCGGTGGTCAATATCGCCGGTCCCAACGGCAGCGG CTTGTCCCATAACCTGTTCACCGACTACAACGTCGGCAGCAACGGGTTGATCCTAAACAACGCCACGAATGCCACGCAAAACACCCAGCTCGGTGGGGTG ATCCTCGGCAACCCCGGCTTGCAGGGGCAGGCAGCCAGCGTGATTCTCAATGAGGTCACCGGTGGCAATCGCAGCCACCTGGGGGGCTACACCGAAGTGG CCGGACAGGCTGCGCGCGTGATTGTCGCCAACCCCCATGGCATCACCTGCAATGGCTGCGGTTTTATCAATACGCCACGGGCGACGCTGACCACTGGCAA
|
|
| Amino Acid Sequence |
>ShlB family hemolysin secretion/activation protein
MSAVLRPALLGVALLCGPLLAAAQTLPGDRELARERQQQVLEEQRRRLDELQNLPGKAAVRTAPALVEDGQCVTLTRITVEGATLLSEAKREALLAPWSG RCLGVPQLNEVLKSLTDHYLRRGYVTTRAYLPQQDLKNGELKIIVVEGRLEGLDSSSLASPAESAMTFPGSVGDVLDLRELEQWVDQLGRLPSRQPQLEL MPGQAVGGSRVALKGERFKPWRVSANRNNHGDESTGRQQAGLGLEWDSPLGLADQLSLRANRDTVSDHWRHSESQSLFYSLPYGWWTFNFSHSQSYYRTR NDASGFAFALSGDTSTQQLRAERVLHRDNLGKTALNIGLSHLRTRNYLEDALLRTSSHRITERQLGFNHGRRIGNAFFNLDAGWQQGIGALDAQRDLSTR SGAPTSRYQKYSLTLSYLQSFRWLDQHWSVDSLATGQRAEDELYGPQRLSVGGFGAVRGFSEQNLSGNSGGYWRSQLRWRHAVGWDALRPWVHEVGVGFG YDVGVIRRGPHNPDVAGRLTGNAWELSARGRHLAASLVFARALERPAVIEHREHPMYARIDLFF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|