Pseudomonas sp. RIT357, BW43_RS20895
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0015031 | protein transport |
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF029745
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Coils | Coil | Coil | - | - | 34 | 54 | - |
| PANTHER | PTHR34597 | SLR1661 PROTEIN | - | - | 13 | 564 | 0.0 |
| Gene3D | G3DSA:2.40.160.50 | membrane protein fhac: a member of the omp85/tpsb transporter family | - | - | 181 | 564 | 2.4E-77 |
| Gene3D | G3DSA:3.10.20.310 | membrane protein fhac | - | - | 60 | 148 | 2.0E-19 |
| Pfam | PF08479 | POTRA domain, ShlB-type | IPR013686 | Polypeptide-transport-associated, ShlB-type | 74 | 148 | 3.3E-24 |
| Pfam | PF17287 | POTRA domain | IPR035251 | ShlB, POTRA domain | 160 | 202 | 2.9E-11 |
| Pfam | PF03865 | Haemolysin secretion/activation protein ShlB/FhaC/HecB | IPR005565 | Haemolysin activator HlyB, C-terminal | 207 | 523 | 1.2E-84 |
| PIRSF | PIRSF029745 | FhaC | IPR027282 | Two partner secretion pathway transporter | 3 | 564 | 0.0 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.