Pseudomonas putida S16, PPS_1407

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0044249 cellular biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00524
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0044237 cellular metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01008
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppt00270 Cysteine and methionine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppt01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF01008 Initiation factor 2 subunit family IPR000649 Initiation factor 2B-related 53 341 5.3E-69
NCBIfam TIGR00524 JCVI: S-methyl-5-thioribose-1-phosphate isomerase IPR011559 Initiation factor 2B alpha/beta/delta 38 341 9.7E-94
Gene3D G3DSA:1.20.120.420 - IPR027363 Methylthioribose-1-phosphate isomerase, N-terminal 11 158 5.8E-43
FunFam G3DSA:1.20.120.420:FF:000008 Methylthioribose-1-phosphate isomerase - - 10 158 1.9E-58
PANTHER PTHR43475 METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE - - 8 349 1.4E-110
Gene3D G3DSA:3.40.50.10470 - IPR042529 Initiation factor 2B-like, C-terminal 159 356 3.2E-67
FunFam G3DSA:3.40.50.10470:FF:000006 Methylthioribose-1-phosphate isomerase - - 158 354 2.5E-79
Hamap MF_01678 Putative methylthioribose-1-phosphate isomerase [mtnA]. IPR005251 Methylthioribose-1-phosphate isomerase 11 351 67.789841
SUPERFAMILY SSF100950 NagB/RpiA/CoA transferase-like IPR037171 NagB/RpiA transferase-like 11 346 2.99E-107
NCBIfam TIGR00512 JCVI: S-methyl-5-thioribose-1-phosphate isomerase IPR005251 Methylthioribose-1-phosphate isomerase 14 341 6.9E-126

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.