Pseudomonas sp. MOIL14HWK12:I1, PSEK12I1_RS23675

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 400 530 7.15E-12
SMART SM00091 pas_2 IPR000014 PAS domain 299 365 2.7E-9
SMART SM00091 pas_2 IPR000014 PAS domain 415 483 0.028
Pfam PF05231 MASE1 IPR007895 MASE1 18 287 2.1E-16
CDD cd00130 PAS IPR000014 PAS domain 424 529 2.23703E-4
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 854 1095 3.92E-75
Gene3D G3DSA:3.30.450.20 PAS domain - - 287 409 6.2E-18
CDD cd01948 EAL IPR001633 EAL domain 855 1094 4.16636E-88
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 674 831 9.4E-43
Gene3D G3DSA:3.30.450.20 PAS domain - - 534 661 1.2E-22
Pfam PF08447 PAS fold IPR013655 PAS fold-3 440 523 6.7E-9
SMART SM00267 duf1_3 IPR000160 GGDEF domain 663 835 1.5E-61
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 672 833 2.2E-40
CDD cd01949 GGDEF IPR000160 GGDEF domain 676 831 2.71749E-49
SMART SM00052 duf2_2 IPR001633 EAL domain 847 1094 5.8E-90
Pfam PF00563 EAL domain IPR001633 EAL domain 855 1089 2.3E-66
SMART SM00086 pac_2 IPR001610 PAC motif 491 532 64.0
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 668 836 6.5E-43
Pfam PF00989 PAS fold IPR013767 PAS fold 545 659 2.6E-11
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 518 1091 0.0
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 679 835 6.12E-46
Gene3D G3DSA:3.30.450.20 PAS domain - - 411 528 2.3E-19
SMART SM00086 pac_2 IPR001610 PAC motif 621 663 130.0
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 296 408 2.4E-12
SMART SM00091 pas_2 IPR000014 PAS domain 544 610 1.3E-7
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 286 400 1.26E-16
CDD cd00130 PAS IPR000014 PAS domain 308 400 4.71251E-10
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 541 670 2.0E-13
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 663 834 1.8E-53
CDD cd00130 PAS IPR000014 PAS domain 553 660 1.09909E-9
Pfam PF00989 PAS fold IPR013767 PAS fold 300 400 1.7E-6
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 835 1096 1.8E-85
SMART SM00086 pac_2 IPR001610 PAC motif 361 403 0.0032
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 528 658 8.38E-20
Coils Coil Coil - - 403 423 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.