Pseudomonas sp. URMO17WK12:I4, H042_RS0122485
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I4 H042DRAFT_scaffold00008.8, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGCCGCCGGCGGCTTCGGCCGCAGAGGGCTTGCCATCCTTGGGCGCCGGCTCGCAGCTGGGTTTGCTGTGTACGTGGAAGCCGTGAATCCCCGGTTCCA GGTCATGCAGCTTGGGCGTGAACACCACGCCGTAAGGGCTTTGGCTGATCACCACCTTGCCCACCGAGCTGCCGACGCCGTTTGCGTCCACTGCGTTGAG TTCGACCGTCTTGTCGGCAGCCTGCAGGCTGGCCGCGCAGCAACTGGCCAGTGCGGCCATCATCCAGCGTTTCATGGTGTTCTCCTTGATGGGTGAATCC AGTGTTCACAGGCTGTGACTGGGCTTCGCCGCAGGGGTTCGTGTTTTCGTTGTCAAAACCGTCGTAAGCCTCGCTTGCCAGCTCTGTGGTGGGCATTTCC GAGAGTTGGAAGGGTTCTTGCAATACCGGCTGCAAAGGCGTCCTGGACGTCAAAAGATTGAATCAGTCGGGGTACCCACGTGGCACTAAATCGAGCACAG
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| DNA Sequence for Gene |
>H042_RS0122485
ATGATTGGCGATGTTCGCAGCAACCTCGCGGGGCTGCGTCACGGCAATCTCGGCATTCCGCTGCTGCTGCTGGTCATGCTCGCCATGGTCATGCTGCCGA TCCCGCCGTTTCTGCTCGACGTGCTGTTCACCTTCAGCATCGCGCTGTCCATCGTCGTCTTGCTGGTGGCGATCTATGCGTTGCGGCCGCTGGATTTCGC CGTGTTCCCGACGATTCTGCTGGCCGCGACGCTGCTGCGCCTGGCACTCAACGTGGCGTCGACGCGCGTGGTGCTGCTGCACGGTCAGGACGGTCACGAC GCCGCGGGCAAGGTGATCCAGGCCTTCGGTGAAGTGGTGATCGGCGGCAACTACGTGGTCGGTATCGTGGTGTTCGCTATCCTGATGATCATCAACTTCG TGGTCGTCACCAAGGGTGCCGGGCGTATTTCCGAGGTGAGCGCGCGCTTCACCCTCGACGCCATGCCCGGCAAGCAGATGGCCATCGACGCCGACCTCAA CGCCGGCCTGATCGATCAGGTCGAGGCCAAGAAACGCCGTAGCGAAGTGGCCCAGGAAGCCGACTTCTACGGTTCCATGGACGGTGCCAGCAAGTTCGTG CGTGGTGACGCCGTTGCCGGCCTGCTGATCCTGTTCATCAACCTGATCGGCGGCATGGCCATCGGCATGCTGCAGCACGGCCTGAGCTTCGGCGACGCTG GCCGTATCTACACCCTGCTGACCATCGGTGACGGCCTGGTCGCACAGATTCCTTCGCTGCTGCTGTCCACCGCCGCCGCCATCATGGTCACCCGCGTATC CAGCGCCGAAGACATGGGCGCCCAGGTCAACCGCCAGATGTTCGCCTCGCCGCGGGCTCTGGCCGTATCCGCCGCCATCATGATCGCCATGGGCCTGGTG CCCGGCATGCCGCACATGTCGTTCATCAGCCTGGGCCTGGTCGCCGCTGGCGCGGCCTACTGGATCGCCAACAAGCAGCGCAAGGTCAAGGAAGCCGAAG TCATCGAAGTGCAGCGCCAGCAGGAGTTGCTGCCAGCGCAGCGCGCCCAGGAGGTCAAGGAACTGGGCTGGGACGATGTGGTGCCGGTGGACATGGTCGG TCTCGAGGTCGGCTACCGGCTGATCCCGCTGGTCGACCGCAACCAGGGTGGTCAACTGCTGGCGCGTATCAAGGGCGTACGCAAGAAGCTTTCCCAGGAA ATGGGGTTCCTGATGCCGTCGGTGCATATCCGCGACAACCTGGATCTGCAGCCCAACGCCTACCGGCTGACGCTGATGGGCGTCAGCGTCGCCGAAGCCG AGGTGTATCCGGATCGCGAGCTGGCGATCAACCCCGGCCAGGTCTTCGGCACGCTCAACGGTGTGGCCGCCAGAGATCCGGCGTTCGGTCTGGAGGCCGT GTGGATCGATCCGGGCCAGCGCGACCAAGCGCAATCGCTTGGCTATACCGTGGTGGACGCCAGCACCGTGGTGGCCACCCATCTCAATCAGATCCTGCAC AAGCACGCCCATGAGCTGCTGGGCCATGAGGAAGTCCAGCAATTGATGCAATTGCTGGCGAAAAGCTCGCCCAAGCTCGCCGAAGAGCTGGTGCCCGGGC TGATTTCCCTGTCGACCCTGCTCAAGGTGCTGCAGGCGCTGCTGCAGGAGCAGGTGCCGGTACGCGACATTCGTACCATCGCCGAAGCCATCGCCAACGT CGCACCGAGGAGTCAAGATCCCGCCGCCATGGTCGCGGCAGTCCGCGTGGCGCTGTCTCGCGCCATCGTGCAAAACATCGTGGGACTAGAGCCGGAGCTG CCTGTGATCACCCTTGAGCCAAGGTTGGAACAGATATTGCTAAACAGTCTTCAGAAGGCCGGTCAGGGCTCCGAGGATGGCATCCTCCTCGAACCCGGTA TGGCAGAGAAGCTGCAGCGTTCCCTGGTGGAAGCAGCGCAGCGTCAGGAGATGCTTGGCAAGCCGGTGATTCTGCTGGCGGCCGGGCCGGTTCGGGGAAT GCTGTCGCGTTTCGCCCGGTTGGCCGTCCCGAGCATGCATGTTCTGGCGTACCAGGAAATTCCGGACAACAAGCAGGTCACCATCGTTGCGACGGTGGGG CAGAACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGAGGGTACGGGCCATGCAGGTCAAACGCTTTTTCGCTGCCGATATGCGCCAAGCCATGAAGCTGGTTCGCGATGAGCTGGGCGCCGATGCGACCATCA TTGCCAATCGCCGTGTGGCCGGTGGTGTGGAACTGACGGCCGCGCTCGATTATCAGGCTCCGCCGGTTCCGGCGCGCCAGGCCAATCCGGCGCTGGAGGC CGAGCTGCGCAAGACCCAGTCGAAGATCGCTTCGGCCCACGCCGAGCTGAGCACGCGTAGCCAGCTTGATGCCGGCAAGGATCGTCAGCTGTTTGGCGCG GCAGCTGCCACGCCGCCGGCCGACAGCCTGGAAGCCGTGCTCAAGCGTCAGCAGCAGAAGCCTGCTGCGGCCGCGGCTGATCAGTCGGCGCTGGACTCCA TGCGCTCCGAATTGCATGGCCTGCGTGAATTGATCGAAATGCAGATGGGCTCGATGGCTTGGGGGCAGATGCAGAGCCGTCGCCCGCAGCAGGCTACTCT
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| Amino Acid Sequence |
>flagellar biosynthesis protein FlhA
MIGDVRSNLAGLRHGNLGIPLLLLVMLAMVMLPIPPFLLDVLFTFSIALSIVVLLVAIYALRPLDFAVFPTILLAATLLRLALNVASTRVVLLHGQDGHD AAGKVIQAFGEVVIGGNYVVGIVVFAILMIINFVVVTKGAGRISEVSARFTLDAMPGKQMAIDADLNAGLIDQVEAKKRRSEVAQEADFYGSMDGASKFV RGDAVAGLLILFINLIGGMAIGMLQHGLSFGDAGRIYTLLTIGDGLVAQIPSLLLSTAAAIMVTRVSSAEDMGAQVNRQMFASPRALAVSAAIMIAMGLV PGMPHMSFISLGLVAAGAAYWIANKQRKVKEAEVIEVQRQQELLPAQRAQEVKELGWDDVVPVDMVGLEVGYRLIPLVDRNQGGQLLARIKGVRKKLSQE MGFLMPSVHIRDNLDLQPNAYRLTLMGVSVAEAEVYPDRELAINPGQVFGTLNGVAARDPAFGLEAVWIDPGQRDQAQSLGYTVVDASTVVATHLNQILH KHAHELLGHEEVQQLMQLLAKSSPKLAEELVPGLISLSTLLKVLQALLQEQVPVRDIRTIAEAIANVAPRSQDPAAMVAAVRVALSRAIVQNIVGLEPEL PVITLEPRLEQILLNSLQKAGQGSEDGILLEPGMAEKLQRSLVEAAQRQEMLGKPVILLAAGPVRGMLSRFARLAVPSMHVLAYQEIPDNKQVTIVATVG QN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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