Sequence View: CR65_RS0125850, Pseudomonas otitidis LNU-E-001

Pseudomonas otitidis LNU-E-001, CR65_RS0125850

Cytoplasmic

Cytoplasmic Membrane

Periplasmic

Outer Membrane

Extracellular

Unknown

Sequence Data

Strain	Pseudomonas otitidis strain LNU-E-001 scaffold4, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene	BLASTN Search
DNA Sequence for Gene	>CR65_RS0125850 GGCCTGCTCAGCCTCGACGGCCAGCGCTTCCTCAACCAGGGCGCGGCGGCGGGTCAGGGCGGCAAGGTCGGCGCCGGGCGCATCGACTTCAGCCTGGCCG GCGCGCTGGCCAACCGCTTCGGCCAGTTGGAAAGCGAAAGCGAGCTGCACCTGCGCGCCGCCGCGATCGACAACAGCGGCGGCAGCCTGCGCGCCCTCGG CCGCAGCGGCAGCACGCGGTTGGTCGCTGGCGGCCTGAACAACGCCTACGGCGTGCTGGAAAGCGCCAACCAGGACCTCGACCTGCAACTGGGCAGCCTG GCCAACGCCGGCGGGCGCATCCTCCACACCGGCAACGGCACCTTCGGCCTGGATTCCGGGCAGGTGATCCGCGCCGGCGGCGAACTGACCACCAATGGCC TGCTGGACATCCGCGCCAGCGAATGGACCAACAGCAGCGTGCTGCAAGCCGGACGCCTGAACCTGGACATCGGCACCTTCCGCCAGACGGCCGAGGGCAA GCTGCTGGCGGTGCAGTCCTTCACTGGCCGCGGCGGCGACTGGAGCAACGACGGCCTGCTGGCCAGCGACGGCAGCTTGCGACTCGACCTGAGCGGCGGC TACCGTGGCAACGGCCGCGCCACCAGCCTCGGCGACTTCGCCCTGAACGCCGCCAGCCTCGACCTCGGCAATGCCGCCAGCCTCGCCGGCGGCGCCAATG TCACGCTTGGCGCCGGCAACCTGCTGGTCAACCGTGGGCGGATCACCGCTGCCGGCGACCTCGTGGCCAGCGCCGCGAGCCTGAACAACTACGGCACCCT GGGCGGCGGCGGCAACCTGCGATTGAACGCGCCCGCCCTGCTCAACGAGCGCGGGTTGCTGTTCAGTGGCGCCGACATGACCCTGCGCGCCGGCGACATC ACCAACCTCTACGGGGATGTGTACAGCCTCGGCAGGCTGGATATCGCCCGCGACGATGCCGGCAACCGTGCCGCCAGCCTGGAAAATATCTCGGCGAATA TAGAAAGCTCTGGAGATACCAGGATTTCTGCCAGCAATATCGTAAATAAGAAAGAATTTTTTGAGGTGTCATCTGAGCTTGTTTCCAGTGCAATCGGGAT GCGGAGAACGTCGCCTGGTAACGGCCACATGGTCTTGCTGGAGAATTACGAGTCGAGTCTGAAAGCTGATGCTCCATCCGCAAGTATTTCTGCAGGAGGG AGTCTCTATGTGCTGGGCTCAGATTTTCTCAATTCGGCATCCTATGTAACGGCTTCGAAAGACATCGATGTGCGTGTAGACAGATTTACCAATCAGGGCG CTACATTAGGAAAGTACTCGGTAAGGAGATCCTTCGAACACCCTTGGCTGCGCGAAGACAAAAGTATTCTGAGTTTTTGGCGCTCGGTAATGGAATATAA TGCTTCGAATGATTCGCAATATCTTCCTTCCAGAAGAGGCGGGGCTCCAAATACCGTCAGTGGTGGATCCATACATTATTGGGATGAGAACTGGAATGAG TCGATTGCCTATACTGGTTGGAAAATGGGAGGGACGGCTAACCGAGAAACCCATGTGTTGATTGGTTGGCAAGATTACTGGACCTTTATTACACCTAGTA ATTTTTATGGAATATTTCCTGAGGCGAAATACACAGAAGGTGTAAGGGTGCCACTTCCTGATGCAATAAGGAATGTCAATTACTTTGATGTTCTTACTGT TTCGGATGGTGCACAGAAAGGTGTGGCTGATGCCGTTGTGCAGGCGGCGGGAAAGGTCAGTATCACGGCTAGCCAAGAGATAAATAATAGCGTCGTTCGA GAAGGACTGCCGGTATCGTCCGAGCTAGGGATAGCCTTGAATACACAAGTGTCGGCTAATACCTCATCTACTATTGTCAACTTGAACAGTCAACTGCCAC CAGACTTGGCAAGGCAACAGATCACTCCTCTCACCCTACCGGGCTTCAGCCTGCCTCAAGGCCAGAATGGGCTCTTCCGCCTGGCGTCTCAAGGAGCCCA GGTGAACCAGGCAAGTGGTGCTCTGAAATCCGCCAGCGATCTCACCCAGAGCGGCCATGGCGTATCTGTATCCGCACAGGCAGGCAGTGACGCAAGTGGC TGGAGTACCCAGGCGCGTCGTGTCGGCGATGATCGTGTCACCTCGCTTGCCGGTTCCGCCTATCAAGGCCGGGTAGCTGAGGCTATCGATGCGCTACGGG CTTCCGCGCCAATCTCGGGCGACGGGGGAAACACTGGCCGTTTCCAGGCCGGTGAGCACCAGGCGACCACGGGACTGGGTGGACTCGTCGAGGGCAATGC ATCGGGTCACAGCGGCAATGGCGTCATCCTCGCCGATCTGCGCGGTGGTCTACCCTCGTTCTCAAGCCTTCCCGCGGCTGATCGTATTCAAGGCACAGTG CCCGGTCACGATGGGAATGGAACTATTCTCGCCAATTGGCAGGGTGCGCAGGCGACGGTCCAGGCCTCGCCTTCGACAGTGCGTGTAGAGGGGGTAGTCT CCAGTCCAGGTGGCAATGGCAGCATCCTTGCCGATCTGCCGGCTGAACAGTCGTCGGTGCAGGCACTGCCTTCGGCCGTTAGGGCTCAGGGCAGCCTGCC TCGCCTCGAAGAGCGGAGCGCCCTTCTTGCCGAGCCTCCGGTTGGGCAGCCGGCGTTGCAAACCCTGCCGTCGGTTGCGCGCGTTGAGGGCGTGCCCAGC AATGCCACACCGAGCAACAGCCACAAGTATCTGATCGAGACCAACCCGGCGCTCACCGAGCTGAAGCAGTTCCTCAACTCGGACTACCTGCTCGGTGGTC TGGGTATCAATCCGGACGATAGCAAGAAGCGCCTGGGTGACGGTCTATACGAGCAGCGCCTGGTACGCGAAGCGATCGTCCAGCGTACGGGGCAGCGCTT CATCGCCGGATTGAACAGCGACGAAGCGATGTTCCGCTATCTGATGGACAACGCCATCGCCAGCAAGGACGTATTGGGACTGACCCCTGGCGTCACCCTC AGCGCCGCCCAGGTGGCGGCGCTGACCCACGACATCGTTTGGCTGGAAGAAGTCGAGGTGAATGGCGAAAAGGTCCTCGCCCCCGTGGTCTACCTGGCCC AGGCCGAGGGGCGGTTGGGCCCGAACGGCGCGCTGATCCAGGGGCGCGACGTGAACCTGATCACCGGCGGGGACCTGAGGAACGCCGGTACCCTGCGCGC GCAGAACGACCTCAGCGCGACAGCCGGCAACATCGACAACAGCGGCCTGATCGAGGCCGGCAACCGCCTCGACCTGCTGGCCAGCGGCTCCATCCGCAAT GACCAGGGCGGCATCATTGCCGGGCGCGAGGTAAGCCTCTCCGCCCTTACCGGAGACGTCATCAATGAACGGACGGTGACCCAGCACCAGTCCTCCTACA GGGGAACCGGTACCACTGAGGCATTTGCCGATAGCGCCGCGCGTATCGAGGCTGCGCAGAAGCTGACCGTTTCGGCAGGACGCGATGTAGCCAATATTGG CGGTGTCATCGACAGCAAGGGCGACCTCGCCTTGCAAGGCGGCAGGGATGTCCTGGTTTCGGCTGCGGTAGCGGAGCGGGGCTGGACGGCAGGAAGCCAG GCATACCAGACCCAGACGACCCAGATGGGCGCCGAGGTCGTGGCGGGGCGCGATATCAGCGTCAGTGCCGGACGCGATATCAGCGTCGCGGGCAGCCGCA TCGACGCTCGTCGCGACGTGACATTCGAGGCGGGTCGCGATGTGGGCCTGGTCGCGGCTGCCAACGAAGAGCATGCCTATGGCAAGACCAAGAAGGTCAC TTTCCAGGACGACAAGATCACCCAGCAGGCCACTCGCGTGGACGCTGGCGGCGATCTGGCGATCAATGCCGGACAGGACCTGCGGCTGGTCGCGAGCCAG GCCAGCGCCGGCGACGAAGCCTACCTGGTGGCCGGCGACAAGCTGGAGCTGCTGGCCGCCAACGACAGCAGTTACTACCTCTACGACAAGAAGAGCAAAG GCAGCTTCGGTAGCAAGAAGACCCGGCGCGACGAAATCACCGATGTGACGGCAGTGGGCAGCCAAATATCCAGCGGCGGCGACCTCACCCTGCTCAGTGG CGGCGACCAGACCTACCAGGGTGCGAAGCTGGAATCGGGCAACGACCTGGCCATCGTCAGCGGCGGCGCGGTGACCTTCGACGCGGTGAAGGACCTGCAC CAGGAAAGCCACGAGAAGAGCAAGGGCGACCTGGCGTGGCAGTCGTCGAAGGGCAAGGGCCAGACCGACGAAACCGTACGCCAGAGCCAGCTCGTCGCCC AGGGCAACCTGGCGATCAAGGCCGTGGAAGGGCTGAAGATCGACCTCAAGCACATCGACCAGAAGACCGTGAGCCAGACCATCGACGCGATGGTGCAGGC GGATCCGCAACTGGCCTGGCTGAAGCAGATGGAGCAGCGCGGCGATGTGGATTGGCGGCGCGTGCAGGAACTGCATGACAGCTGGAAGTACAGCAACTCC GGGCTGGGCGTCGGCGCGCAGTTGGCGATAGCGATCGTTGTGACTTACTTCACGGCGGGCGCAGCCAGCGGGGCGATTGCAACGGCCGGGGCCGGAACCT CCATGGCAGGCGCGACCGCAGCCGCTACCGCTACGACTTCGGCGGGCTGGTTGAACGCGGCAGGTACCGCAGCGCTCAGCGGCGTGGCCAGCAATGGAGC GATCAGCACCATCAACAACCGGGGAAACCTGGGGGATGTCGTCAAGGACGTGACCTCCAGCGATGCGCTGAGGGGCTATGTAGTCGCTGGCACGACTGCG GGGCTGACTGCCGGCGTCTACGACAAATGGACCTCGACCCAGACCGGCACCTCGACCGCTCTACCGAACACCGGGGCCGTGGCGCCCGCCGCAGGGTTGG GCACCTGGCAAGGCGTGGGCCAGTTCACCTCGAACCAGTTGCTGCAGAATGGTACTTCGGTGCTGTTGGACCGGGCGCTGGGCGGCAAGGGCAGCCTGGG CGATGCGTTGCAAAACAGCCTGGCAAATGCCTTTGCGGCCTACGGCTTCAAGCTGATTGGCGACACCACCCATGGTGTGCTGGACGACGGCAGCCTCGGC AAGATCGGCTTGCACGCCCTGATGGGAGGTCTGGCCGCCGAAGCGGTCGGTGGCGATTTCCGTACCGGAGCCCTGGCTGCGGGAGTCAACGAGGCGCTGG TGGATAGCCTCGCCAAGCAATACGCCAGCCTGCCCATCGATGACAAGAAGGGCCTGCTGACCATGAGTTCGCAGTTGATCGGCATGCTGGCGGCTTCGAC GCAGGGCGATGCGGACGCCAAGAGCTTGCAGACGGGGGCCTGGGTGGCGGGGAATGCCACCCAACACAACTACCTCAGTCATTGGCAGGAGGAGAAGAAG CGGCAGGAGGTCGATGGCTGCAAGGACAAACAGCTCTGCAAAACCGGAATAGAAGCCAAATGGGCAATTATTTCGGCCCAGCAGGATGTCGGTATCGTCG TAGGTGTTGGAGGAGGCATCGGTCTTTCGACAGCTGAAACCGCAGTGGGTGTTTATGAGCTGGTCAAGAACTGGAGGGAAACCTATGCAGCTCTGGAGCA GTTGGCCACATCGCCAGAATTCCGGCAGCAATTTGGCGATAACTACCTGAAGGGGCTGGAAGAGCGCGCC BLASTN Search \| DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene	GCANGGGCATCGGTCTTTCGACAGCTGAAACCGCAGTGGGTGTTTATGAGCTGGTCAAGAACTGGAGGGAAACCTATGCAGCTCTGGAGCAGTTGGCCAC TTCGCCAGAGTTCCGGCAGCAATTTGGCGATAACTACCTGAAGGGGCTGGAAGAGCGCGCCGCATTCTTGACCCAGGCATACGAGGATGCCGGCTGGCAA GGTTCGGTCACAGCTGGTGTCGAGGGTGGTAGGTTCGCTGCGGAACTTGTTGGCGTTCTGACGGCAGTGAAAGGTGGCGCGCAGATAACCGCCAAGCTGC CAACAGCAGCCAAGAACCTGGTCAACGCGATTGCGGAGTCACCTGTTTCCGGTAGTATGAGTTCGCAGCTCGGGGCAGTGGGGGATTTGGGTAAGCTGGG TGGGGGGCCAAAAGGATCAGCAACGGCTCTTCAGAATTTTGGTGGACGCACTGCTAATGACCTTGTTGCTGCTGCAACTGAACCAATCAACAAGGAAGGT BLASTN
Amino Acid Sequence	>hypothetical protein GLLSLDGQRFLNQGAAAGQGGKVGAGRIDFSLAGALANRFGQLESESELHLRAAAIDNSGGSLRALGRSGSTRLVAGGLNNAYGVLESANQDLDLQLGSL ANAGGRILHTGNGTFGLDSGQVIRAGGELTTNGLLDIRASEWTNSSVLQAGRLNLDIGTFRQTAEGKLLAVQSFTGRGGDWSNDGLLASDGSLRLDLSGG YRGNGRATSLGDFALNAASLDLGNAASLAGGANVTLGAGNLLVNRGRITAAGDLVASAASLNNYGTLGGGGNLRLNAPALLNERGLLFSGADMTLRAGDI TNLYGDVYSLGRLDIARDDAGNRAASLENISANIESSGDTRISASNIVNKKEFFEVSSELVSSAIGMRRTSPGNGHMVLLENYESSLKADAPSASISAGG SLYVLGSDFLNSASYVTASKDIDVRVDRFTNQGATLGKYSVRRSFEHPWLREDKSILSFWRSVMEYNASNDSQYLPSRRGGAPNTVSGGSIHYWDENWNE SIAYTGWKMGGTANRETHVLIGWQDYWTFITPSNFYGIFPEAKYTEGVRVPLPDAIRNVNYFDVLTVSDGAQKGVADAVVQAAGKVSITASQEINNSVVR EGLPVSSELGIALNTQVSANTSSTIVNLNSQLPPDLARQQITPLTLPGFSLPQGQNGLFRLASQGAQVNQASGALKSASDLTQSGHGVSVSAQAGSDASG WSTQARRVGDDRVTSLAGSAYQGRVAEAIDALRASAPISGDGGNTGRFQAGEHQATTGLGGLVEGNASGHSGNGVILADLRGGLPSFSSLPAADRIQGTV PGHDGNGTILANWQGAQATVQASPSTVRVEGVVSSPGGNGSILADLPAEQSSVQALPSAVRAQGSLPRLEERSALLAEPPVGQPALQTLPSVARVEGVPS NATPSNSHKYLIETNPALTELKQFLNSDYLLGGLGINPDDSKKRLGDGLYEQRLVREAIVQRTGQRFIAGLNSDEAMFRYLMDNAIASKDVLGLTPGVTL SAAQVAALTHDIVWLEEVEVNGEKVLAPVVYLAQAEGRLGPNGALIQGRDVNLITGGDLRNAGTLRAQNDLSATAGNIDNSGLIEAGNRLDLLASGSIRN DQGGIIAGREVSLSALTGDVINERTVTQHQSSYRGTGTTEAFADSAARIEAAQKLTVSAGRDVANIGGVIDSKGDLALQGGRDVLVSAAVAERGWTAGSQ AYQTQTTQMGAEVVAGRDISVSAGRDISVAGSRIDARRDVTFEAGRDVGLVAAANEEHAYGKTKKVTFQDDKITQQATRVDAGGDLAINAGQDLRLVASQ ASAGDEAYLVAGDKLELLAANDSSYYLYDKKSKGSFGSKKTRRDEITDVTAVGSQISSGGDLTLLSGGDQTYQGAKLESGNDLAIVSGGAVTFDAVKDLH QESHEKSKGDLAWQSSKGKGQTDETVRQSQLVAQGNLAIKAVEGLKIDLKHIDQKTVSQTIDAMVQADPQLAWLKQMEQRGDVDWRRVQELHDSWKYSNS GLGVGAQLAIAIVVTYFTAGAASGAIATAGAGTSMAGATAAATATTSAGWLNAAGTAALSGVASNGAISTINNRGNLGDVVKDVTSSDALRGYVVAGTTA GLTAGVYDKWTSTQTGTSTALPNTGAVAPAAGLGTWQGVGQFTSNQLLQNGTSVLLDRALGGKGSLGDALQNSLANAFAAYGFKLIGDTTHGVLDDGSLG KIGLHALMGGLAAEAVGGDFRTGALAAGVNEALVDSLAKQYASLPIDDKKGLLTMSSQLIGMLAASTQGDADAKSLQTGAWVAGNATQHNYLSHWQEEKK RQEVDGCKDKQLCKTGIEAKWAIISAQQDVGIVVGVGGGIGLSTAETAVGVYELVKNWRETYAALEQLATSPEFRQQFGDNYLKGLEERA BLASTP \| DIAMOND BLASTP (DIAMOND is faster than BLASTP) Search for conserved domains in this protein at NCBI CDD site