Pseudomonas aeruginosa PAO1, PA5183.01 (phrX)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| LasR binding site | 5836795 | 5836810 | + |
|
Details | |
| LasR binding site | 5836796 | 5836811 | + |
ECO:0000314
direct assay evidence used in manual assertion |
19682264 | Details |
| Inverted repeat: GCAACTGTTG-N93-CAACAGTTGC | 5837002 | 5837114 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Shine-Dalgarno sequence | 5836899 | 5836901 | + |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |
Motifs annotated in this feature
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: GTAAAAGCCCCGCG-N2-CGCGGGGCTTTTAC | 5836427 | 5836456 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Rho-independent transcription terminator TERM 1425 | 5836427 | 5836456 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |
| Rho-independent transcription terminator TERM 1426 | 5836433 | 5836450 | - |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |
| Rho-independent transcription terminator TERM 1427 | 5836433 | 5836450 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: CAAAGGCCGG-N10-CCGGCCTTTG | 5835916 | 5835945 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: GTAAAAGCCCCGCG-N2-CGCGGGGCTTTTAC | 5836427 | 5836456 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Rho-independent transcription terminator TERM 1424 | 5835920 | 5835941 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |
| Rho-independent transcription terminator TERM 1425 | 5836427 | 5836456 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |