Motif View

Internal ID 17656515
Source Database TransTermHP TERM 1424
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1424
Sequence GGCCGGGCCGGATGGTCCGGCC
Look for more occurrences
Start 5835920
End 5835941
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCCCTACGACGCAAA(5' tail) GGCCGGGCC(5' stem) GGAT(loop) GGTCCGGCC(3' stem) TTTGTGCGAACGACC(3' tail). Confidence: 91. opp_overlap 5835920

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685