Pseudomonas fluorescens SBW25, PFLU5329
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens SBW25 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TATTTGATCAGGACTTCCTACCTGCTGTGGTGCAATCCCGACGAAACACTCAACTCCGCGCCTGCAGCACGCGTATCCAAACTGCATTTCTTTTTGCTGA CGCTGATTAACCCCAAGGGCTTGCTGATCGTCTCGTTCATCGTCCCGATGCAGACGTTTGCCGACGTGAACCTGTATGTGCAGTTCGTCGCACAATTCAC GCTGGTGGTGATACCGGTGGGCTGCACCTGGGTACTGTTCGGTGCCCGCATCAAACGAGGCGGATACGCCTGGTTGACGCCCCACACCATCAACCGCGCA GCCTCTGTGGTGATCAGCCTCTTCACGCTGGCGATCCTGACCCGGCTGGCAGACAGCCTGATCCATACCGGCAGCGCGCTTTAGTCCCCGCCAAGCGGGG CTGGCACTTTGCCACAAGTCAAGGCATGCTAGCCGCCCTCCGGGCGTCCGGCTTATAGTGCACGTCGCGCGCCAGTCCAGCCAAACCGCAGGATCACAGC
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| DNA Sequence for Gene |
>PFLU5329
TTGTCCAAAGTCACGCCGCCAACTCCCCTGCGCGCCGCTCATATTGCGCCGGGAGCGCCCCTGCACGGCACCCTCAAAGGCGCATTGGCGACGCTCGTCC TCATGCTGCTCGCTTTATTGTTCTGGCAACTGCTGGACCAGCTGCAGCAAAACCAGAAGAACCAGCAGCAATACACCATCGACTACAGCGCCGACCTGGC GGAACAGATCAGCCTGAACATGGCCCTGAGCGCAAAAATCGCCCTGAACCTGCTGCCGATGATCGAACCACCGCGCGACAGCGAACAGCAACAGGCGTTG ATGCGCACCCTGCAGCGCTCGCTGCCGGAGCTGCGCAGCCTCGCCCTGCTCGCCCCCAGCGGCGCGGTGATCAGTGACAGCGCCAGTGACAGCCAGGACA GCGCCTTGCTCGAGGAGTTGGTGCAGCGCAGCCACGGCCAGTCCTACTACCTGAGCAACAGCAACGACGGCACCCTCATCTATTTATTGCTGCACCAGCC CAGCGGTGGCTCGAGGGTTTACTGGGCGCTGCGCCTGTCGCCCAATTACCTGGCAAACCTCACACGCCAGGACGGTCAGGGCCTGCGCCCCATGTGGGCC ATCGAGAATCGCCTCAACCACCGCGTCATCAGCCGCGACAGTGGTATGCCGGCGCAGTGGACGTCCGCCCTCACCCCGGACGAATTGAATAAAAGCGTAC TGGTCACGCCCCTGAGCAAAAGCGACTGGCAGCTGCGCGGGTTGTTCGACCGCACCGCCGTGCTGGAACAACTGCTGCCGGCGTTCATCGGCAAATGCCT GCTGGGCCTGGCCTTCTCGCTGATCCCGGTAATCGTGCTGCTGAACATGCGCCGTCGCCAGCGCCAGGTGCATGAAGGGCGGCGACGCTACCAGGATATT TTCGAAGGCACCGGCGTGGCCCTTTGCGTGCTTGACCTGTCAGGCCTGAACGCCTTCTTCCAAAGGACCCCACTGGAGACTCGCGAGCAACTGCACACCT GGCTGCAGGACAACCCCGATGAGCGTCAGCAACTGCTCAAGGAACTGCGCATCACCGAGGTCAACCAAGTGGCGGTGCGCTTGCTCAACGTAGGCTCTTG CGAGGAGGCCTGGGAGCGCCTGATCGATGACTGCCCGCGCAACGCCACCTCCATCGGCTACCAGATCCTCGAAGCCGTGCTGACCCAACAGCACCAGTTG GAGCTGGAAATCCAGCTCAAGGACATTGCCGGTAACGAGCAGTACCTGTGGCTGGTGATGCGCCTGCCGGAGCAGCAGGACGACTCCAAGGCCGTGATCC TCAGCATCAGTGATATCACCAGCCGCAAGCTGATCGAATTGTCGTTGGTGGAGCGCGAAAGCTTCTGGTCGGACGTGGTGCGCACCGTCCCCGATCACCT GTACGTGCAGGACGTGATCAGCCAGCGCATGATTTTCAGCAACCACCATTTGGGCCACACCCTCGGCTATAACAAAGCCGAACTGCAGCAAATGGGCGAA TACTTCTGGGAAATCCTGCTGCACCCCGAGGACGCCGAGCACTACCACGACTTGCGCCAGCAACAACGCCAGGTCGGCTACACCACCCAATTGCAATGCC AGTTGCGCTTTCGCCATCGCAACAACCAATGGCGGCGTTTTGACATACGCGAACAGGCCCTGGCCCGCGACAAGTCTGCGCAGATCACCCGCATCATCGG CGTGGCCAAGGACATCACCGATCAGATCGAAGCCAGCGAATCCCTGCGCGACAGCGAACAGCGCTACCGCATGCTCGCCGAAAGCATCAGCGACGTGATC TGCTCCACCGACAGCCAGTTGGCCCTCAATTACATCAGCCCTTCGGTCAACGCCGTGCTGGGCTATGACGTGGATTGGGTGTTCAAGAACGGCTGGCAGT CGATCATCGCCAACCCGCAGCAACTGACCGGCATTTATAGCCTGGTGGAACAGGTCAGCCGCGCCTTGGGCGATATCGAAGCACTGAATAAGCTGCGCGA TGAGATTCAAACCCAACTGTTCCTGTTCGACTGCCTACGCGCTGACGGTCGCAAAGTGCCGATCGAGTTACGCCTGGTGCTGGTGTGGGACGAACACGGC GCCTTCGAAGGCATCCTTGGCGTGGGCCGCGATATCAGCCAGCAACGCCGTGCCGAGAAAGACCTGCGCATGGCGGCCACGGTCTTCGAACACTCCACCT CGGCGATCCTGATCACCGACCCCGCCGGTTACATCGTGCAAGCCAACGAGGCGTTCAGCCGGGTCAGCGGCTATGAGGTCAGCGATGTACTCGACCAGTT GCCGAACATGCTCACCGTCGACGAACAGCAGGAAGCCCACCTGCGCTACGTGCTCAAACAGTTGCACCAGCACAGCACCTGGGAAGGCGAAGTGTGGCTC AAGCGCCGCAACGGCGAGCATTACCCGGCCTGGGTCGGCATTACCGCCGTGTTCGACGACGAAGGCGACCTGGCCAGCTATGTGTGCTTCTTCAGTGATA TCAGCGAGCGCAAGGCCAGCGAGCAGCGCATCCACCGCCTGGCCTACTACGACGCCCTGACCCACCTGCCTAACCGCACGCTGTTCCAGGACCGCCTGCA CACTGCGTTGCAGTCGGCCGAACGGCAGAAGTCGTGGGTGGTGTTGATGTTCCTCGACCTCGACCGCTTCAAGCCGATCAACGACTCCCTGGGCCACGCC GCCGGCGACCGCATGCTCAAGGAAATGGCCACGCGCCTGCTGGGCTGCGTGGCCGAAGACGATACCGTGGCGCGCATGGGTGGCGACGAGTTCACCTTGC TCCTGCAACCGCGCATCAGCCGCGAAATGGCGCTCAACCGTGCGATCCATGTGGCCGAGCAGATCCTCGCCAGCCTGGTGAAACCGTTCGTACTGGAAGG CCGCGAGTTCTTTGTGACGGCCAGTATCGGCATCGCCCTCAGCCCGCAGGACGGCAACGAGCTGAGCCAGTTGATGAAAAACGCCGACACCGCGATGTAT CACGCCAAGGAACGCGGCAAGAACAATTTCCAGTTTTACCAGGCCGACATGAACGCCAGCGCCCTGGAGCGCCTGGAGCTGGAAAGCGACCTGCGCCACG CCCTGGACCAGAACGAATTCGTGCTCTATTACCAACCGCAGTTCAGCGGCGACGGCAAACGCCTGACCGGCGCCGAAGCCTTGCTGCGCTGGCGTCATCC GCGACGTGGCCTGGTGCCGCCGGGGGATTTCATCCCGGTGCTGGAAGAATTGGGCCTGGTGGTGGACGTGGGCGACTGGGTGATCAGCGAAGCCTGTCGC CAGCTCAAGACCTGGCACCAGAACAAGGTCCGCGTGCCGAAAGTCTCGGTGAACATCTCCGCCCGACAGTTCTCCGACGGGCAGTTAGGCACGCGCATCG CCACCATTCTCAAGGACACCGGCCTGCCGCCGGCGTGCCTGGAGCTGGAGCTGACCGAAAGTATCCTGATGCGCGAAGTCAACGAAGCCCTGCATATCCT CGACAGCCTGAAAAACCTGGGCCTGAGCATTGCGGTCGACGACTTCGGCACGGGTTATTCGTCGCTCAACTACCTCAAGCAATTCCCCATCGATGTGTTG AAGATCGACCGCACCTTCGTCGACGGCCTACCGTCCGGCGAACAGGACGCGCAGATCGCCCGCGCGATTATCGCCATGGCGCACAGCCTGAACCTGGCCG TGATCGCCGAGGGCGTGGAAACCCATGAGCAGCTGGACTTCCTGCGTGAGCATGGGTGTGACGAGGTGCAGGGCTACTTGTTCGGGCGGCCGATGCCGGC GAATCGGTTCGAGGCGCAGTTCAGCAATGATGCGCTGTTCATGTTCGACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AATTCTGCGGTGAGGCTACTGGCCTAATCGGGGGCAAGCCCCCTCCCACATTCTGATCTGTGAACACATTCAACTGTGGGAGGGGGCTTGCCCCCGATTA GGCACTCACAGCCACCGCCTATCCCAGATGAGCCCCGCTTGTCCGCGACATGATGTCCTTTCATATGCCATCTAAAACCCATTGGGTTAGAATGCCCTCC TTTTCTGCCCCCGATCCTTGAGGACCGCCATGTTCAGCCGTGATTTGACTATTGCCAAGTACGACGCCGATCTCTTCGCCGCCATGGAGCAAGAAGCCGT GCGCCAGGAAGAGCACATTGAGCTGATCGCTTCGGAAAACTACACCAGCCCTGCGGTGATGGAGGCTCAAGGTTCGGTTCTGACCAACAAGTACGCCGAA GGCTACCCAGGCAAGCGCTACTACGGTGGTTGCGAGTACGTCGACGTGGTTGAGCAGTTGGCCATCGACCGTGCAAAAGAACTGTTCGGCGCCGATTACG
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| Amino Acid Sequence |
>putative sensory box GGDEF/EAL domain-containing protein
MSKVTPPTPLRAAHIAPGAPLHGTLKGALATLVLMLLALLFWQLLDQLQQNQKNQQQYTIDYSADLAEQISLNMALSAKIALNLLPMIEPPRDSEQQQAL MRTLQRSLPELRSLALLAPSGAVISDSASDSQDSALLEELVQRSHGQSYYLSNSNDGTLIYLLLHQPSGGSRVYWALRLSPNYLANLTRQDGQGLRPMWA IENRLNHRVISRDSGMPAQWTSALTPDELNKSVLVTPLSKSDWQLRGLFDRTAVLEQLLPAFIGKCLLGLAFSLIPVIVLLNMRRRQRQVHEGRRRYQDI FEGTGVALCVLDLSGLNAFFQRTPLETREQLHTWLQDNPDERQQLLKELRITEVNQVAVRLLNVGSCEEAWERLIDDCPRNATSIGYQILEAVLTQQHQL ELEIQLKDIAGNEQYLWLVMRLPEQQDDSKAVILSISDITSRKLIELSLVERESFWSDVVRTVPDHLYVQDVISQRMIFSNHHLGHTLGYNKAELQQMGE YFWEILLHPEDAEHYHDLRQQQRQVGYTTQLQCQLRFRHRNNQWRRFDIREQALARDKSAQITRIIGVAKDITDQIEASESLRDSEQRYRMLAESISDVI CSTDSQLALNYISPSVNAVLGYDVDWVFKNGWQSIIANPQQLTGIYSLVEQVSRALGDIEALNKLRDEIQTQLFLFDCLRADGRKVPIELRLVLVWDEHG AFEGILGVGRDISQQRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYEVSDVLDQLPNMLTVDEQQEAHLRYVLKQLHQHSTWEGEVWL KRRNGEHYPAWVGITAVFDDEGDLASYVCFFSDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHTALQSAERQKSWVVLMFLDLDRFKPINDSLGHA AGDRMLKEMATRLLGCVAEDDTVARMGGDEFTLLLQPRISREMALNRAIHVAEQILASLVKPFVLEGREFFVTASIGIALSPQDGNELSQLMKNADTAMY HAKERGKNNFQFYQADMNASALERLELESDLRHALDQNEFVLYYQPQFSGDGKRLTGAEALLRWRHPRRGLVPPGDFIPVLEELGLVVDVGDWVISEACR QLKTWHQNKVRVPKVSVNISARQFSDGQLGTRIATILKDTGLPPACLELELTESILMREVNEALHILDSLKNLGLSIAVDDFGTGYSSLNYLKQFPIDVL KIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLDFLREHGCDEVQGYLFGRPMPANRFEAQFSNDALFMFD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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