Pseudomonas fluorescens SBW25, PFLU5329

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00267 duf1_3 IPR000160 GGDEF domain 837 1013 2.3E-67
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 348 449 4.89E-6
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 1024 1278 1.6E-102
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 723 1274 0.0
SMART SM00086 pac_2 IPR001610 PAC motif 673 715 9.5E-4
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 845 1011 2.5E-40
CDD cd01949 GGDEF IPR000160 GGDEF domain 849 1011 1.94515E-62
Pfam PF13426 PAS domain IPR000014 PAS domain 735 836 2.5E-16
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 727 843 1.8E-18
Gene3D G3DSA:3.30.450.20 PAS domain - - 282 446 2.4E-7
Gene3D G3DSA:3.30.450.20 PAS domain - - 585 724 3.6E-19
SMART SM00086 pac_2 IPR001610 PAC motif 532 575 1.0E-4
SMART SM00091 pas_2 IPR000014 PAS domain 587 653 3.3
SMART SM00091 pas_2 IPR000014 PAS domain 723 789 5.0E-7
CDD cd00130 PAS IPR000014 PAS domain 596 712 0.00205683
Pfam PF13426 PAS domain IPR000014 PAS domain 600 714 3.0E-5
CDD cd00130 PAS IPR000014 PAS domain 732 834 1.11351E-11
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 439 573 5.23E-13
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 851 1019 5.7E-61
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 1023 1279 3.4E-107
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 848 1009 4.7E-50
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 735 845 1.77E-23
SMART SM00091 pas_2 IPR000014 PAS domain 454 524 0.12
SMART SM00086 pac_2 IPR001610 PAC motif 403 442 240.0
Gene3D G3DSA:3.30.450.20 PAS domain - - 447 573 7.4E-15
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 583 722 3.8E-10
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 1028 1275 5.89E-94
Pfam PF08447 PAS fold IPR013655 PAS fold-3 478 569 5.8E-9
CDD cd01948 EAL IPR001633 EAL domain 1029 1267 2.28408E-117
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 853 1014 4.16E-49
Gene3D G3DSA:3.30.450.20 PAS domain - - 725 850 2.9E-29
Pfam PF00563 EAL domain IPR001633 EAL domain 1029 1264 1.0E-76
SMART SM00086 pac_2 IPR001610 PAC motif 795 837 1.6E-5
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 451 582 1.2E-7
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 843 1015 4.0E-45
SMART SM00052 duf2_2 IPR001633 EAL domain 1023 1269 2.8E-129
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 572 713 4.19E-15

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.