Pseudomonas fluorescens SBW25, PFLU5266 (carA)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0004088	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_01209	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006541	glutamine metabolic process	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_01209	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_01209	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG (InterPro)	00250	Alanine, aspartate and glutamate metabolism	InterPro 5.8-49.0	ECO:0000259 match to InterPro signature evidence used in automatic assertion	0
UniPathway	UPA00068	L-arginine biosynthesis	InterPro 5.8-49.0	ECO:0000259 match to InterPro signature evidence used in automatic assertion	0
UniPathway	UPA00070	UMP biosynthesis via de novo pathway	InterPro 5.8-49.0	ECO:0000259 match to InterPro signature evidence used in automatic assertion	0
KEGG (InterPro)	00240	Pyrimidine metabolism	InterPro 5.8-49.0	ECO:0000259 match to InterPro signature evidence used in automatic assertion	0

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
FunFam	G3DSA:3.40.50.880:FF:000011	Carbamoyl-phosphate synthase small chain	-	-	152	378	4.1E-126
PRINTS	PR00099	Carbamoyl-phosphate synthase protein GATase domain signature	-	-	264	280	3.0E-39
NCBIfam	TIGR01368	JCVI: glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	IPR006274	Carbamoyl-phosphate synthase, small subunit	5	375	0.0
PRINTS	PR00096	Glutamine amidotransferase superfamily signature	-	-	264	275	7.2E-11
PRINTS	PR00099	Carbamoyl-phosphate synthase protein GATase domain signature	-	-	281	298	3.0E-39
FunFam	G3DSA:3.50.30.20:FF:000001	Carbamoyl-phosphate synthase small chain	-	-	2	151	1.8E-66
Gene3D	G3DSA:3.40.50.880	-	IPR029062	Class I glutamine amidotransferase-like	152	377	8.4E-81
Pfam	PF00117	Glutamine amidotransferase class-I	IPR017926	Glutamine amidotransferase	197	372	1.8E-46
Gene3D	G3DSA:3.50.30.20	-	IPR036480	Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily	2	151	3.5E-64
Hamap	MF_01209	Carbamoyl-phosphate synthase small chain [carA].	IPR006274	Carbamoyl-phosphate synthase, small subunit	3	378	47.101154
PRINTS	PR00096	Glutamine amidotransferase superfamily signature	-	-	236	245	7.2E-11
PRINTS	PR00096	Glutamine amidotransferase superfamily signature	-	-	349	362	7.2E-11
PRINTS	PR00099	Carbamoyl-phosphate synthase protein GATase domain signature	-	-	194	208	3.0E-39
SUPERFAMILY	SSF52021	Carbamoyl phosphate synthetase, small subunit N-terminal domain	IPR036480	Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily	4	141	1.44E-57
PRINTS	PR00099	Carbamoyl-phosphate synthase protein GATase domain signature	-	-	233	247	3.0E-39
CDD	cd01744	GATase1_CPSase	IPR035686	Carbamoyl-phosphate synthase small subunit, GATase1 domain	194	371	5.70144E-110
Pfam	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain	IPR002474	Carbamoyl-phosphate synthase small subunit, N-terminal domain	7	132	1.4E-51
SUPERFAMILY	SSF52317	Class I glutamine amidotransferase-like	IPR029062	Class I glutamine amidotransferase-like	153	376	3.06E-62
PANTHER	PTHR11405	CARBAMOYLTRANSFERASE FAMILY MEMBER	-	-	3	359	1.8E-54
PRINTS	PR00099	Carbamoyl-phosphate synthase protein GATase domain signature	-	-	306	317	3.0E-39
SMART	SM01097	CPSase_sm_chain_2	IPR002474	Carbamoyl-phosphate synthase small subunit, N-terminal domain	3	133	2.9E-93

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.