Pseudomonas fluorescens SBW25, PFLU4632 (prpB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0019629 | propionate catabolic process, 2-methylcitrate cycle |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02317
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0003824 | catalytic activity |
Inferred from Sequence Model
Term mapped from: InterPro:cd00377
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0046421 | methylisocitrate lyase activity |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02317
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| UniPathway | UPA00946 | propanoate degradation | InterPro 5.8-49.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
0 |
| KEGG (InterPro) | 00640 | Propanoate metabolism | InterPro 5.8-49.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
0 |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| CDD | cd00377 | ICL_PEPM | IPR039556 | ICL/PEPM domain | 13 | 256 | 1.76807E-96 |
| SUPERFAMILY | SSF51621 | Phosphoenolpyruvate/pyruvate domain | IPR015813 | Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily | 8 | 292 | 9.87E-100 |
| NCBIfam | TIGR02317 | JCVI: methylisocitrate lyase | IPR012695 | 2-methylisocitrate lyase | 10 | 294 | 0.0 |
| PANTHER | PTHR42905 | PHOSPHOENOLPYRUVATE CARBOXYLASE | - | - | 1 | 285 | 4.0E-85 |
| FunFam | G3DSA:3.20.20.60:FF:000009 | 2-methylisocitrate lyase | - | - | 5 | 297 | 0.0 |
| Pfam | PF13714 | Phosphoenolpyruvate phosphomutase | - | - | 18 | 257 | 2.3E-46 |
| Gene3D | G3DSA:3.20.20.60 | - | IPR040442 | Pyruvate kinase-like domain superfamily | 1 | 297 | 3.6E-104 |
| Hamap | MF_01939 | 2-methylisocitrate lyase [prpB]. | IPR012695 | 2-methylisocitrate lyase | 5 | 296 | 51.205917 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.