Pseudomonas fluorescens SBW25, PFLU4612
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens SBW25 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GAAGTGATGCTCAAGGTGTTGTACGGCCTGAAGAACTTCGAGGGCAAATCGAAGTTCAAGACCTGGCTGTACAGCATCACGTACAACGAGTGCATCACGC AGTATCGGAAGGAACGGCGAAAGCGTCGCTTGATGGACGCTTTGAGTCTGGACCCCCTTGAGGAGGCGTCTGAAGAAAAGGCGCCGGCACCCGAGGAGAA GGGCGGACTCGATCGCTGGCTGGTGTATGTGAATCCGATTGACCGGGAAATTCTGGTGCTACGATTTGTCGCAGAGCTGGAATTTCAGGAAATCGCCGAC ATCATGCACATGGGTTTGAGTGCTACAAAAATGCGTTACAAACGTGCTCTTGATAAATTACGTGAGAAATTTGCGGGCGAGACTGAAACTTAGTGCGTGG CAAATATCTCTTACGTGTAGGCAAGTTCTGTTAGACTTGTCGCCGAGTTGTCCCCCGGTTTGTGGGACTGCTTTACAATCACCAGATGGGGATTTAACGG
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| DNA Sequence for Gene |
>PFLU4612
ATGAAACTGAAAAACACCTTGGGCTTGGCCATTGGTTCTCTTATTGCCGCTACTTCTTTCGGCGTTCTGGCACAAGGCCAAGGCGCAGTTGAAGGCGAGC TGTTCTACAAGAAGCAGTACAACGATAGCGTCAAGCACATCGAAGACGGCTTCAATCCTGGCGCTCGCATCGGTTACTTCCTGACCGACGACCTGTCCTT GAACCTGTCCTACGACAAAACCAACCACACCCGTTCGAACGACGGTACTGGTAACCAGAAGATCAAAGGCGATACCGGCAGCCTGGTTGCCCAGTATCAC TTCGGTCAAGCTGGCGTAGACAGCCTGCGTCCATACGTAGAAGGCGGTTTCGGCCACCAGAGCCGTACCAACGTTCAGGCTGACGGCCACAGCGGTCGCG ACCAGACTACCTTCGCTACCGTTGGTACTGGCGTGAAGTACTACTTCACCAACAACCTGTACGCTCGTGCCGGTGTTGAAGCTGACTACGGTCTGGACAA CGGCAAGTGGGACTACTCCGCACTGGTCGGCCTGGGCGTGAACTTCGGCGGTAACGCTGGCGCAGCTGCTCCAGCTCCTACCCCAGCACCAGCTCCAGAG CCAACTCCAGAGCCAGAAGCTCCAGTTGCTCAGGTTGTTCGTGTTGAGCTGGACGTTAAGTTCGACTTCGACAAGTCGGTTGTTAAGCCTAACAGCTACG GCGACGTGAAAAACCTGGCCGACTTCATGGCTCAGTACCCAGCTACCAACGTAGAAGTTGCTGGTCACACTGACTCCGTAGGTCCAGACGCTTACAACCA GAAGCTGTCCCAGCGTCGTGCTGACGCTGTTAAGCAAGTCCTGGTTAAAGATGGCGTTGCTCCAAGCCGCATCACCGCAGTAGGTTACGGCGAATCCCGC CCAGTTGCTGACAACGCAACTGAAGCTGGTCGTGCTGTTAACCGTCGCGTAGAAGCGTCGGTTGAAGCTCAAGCTCAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTACTGAGTGGTAGAAAAAAGCCCGGCTTAGGCCGGGCTTTTTTTCGCCTGCGATTTGCCTCAGGCGCGTACGGCTTCTGCGAGGTAGGCGGCCTGTTCG GCGGCGGCAACACGGCCGATCACCAGGATCGCGGGGCTCTTCAGGGCAAATGCCTGTGCATCTTCATACATCCGGGACAGCTCGCTGCGGCATTCCCTTT GTTGGGGCAGCGATGCGTTTTCGATCATCGCCACCGGCATATCCGCCGCCATCCCGCCGTCGAGCAATTGCTGACGGATCTCCTCCAGCTTCGCTACGCC CATGTACACCACCAAGGTGGTCCCGCCCTCTGCCAGTGCGCGCCAATTCAGGCTGCTGTCGTCCTGGGTGTGCGCTGTGACCAGGGTCACGCCGCGACTC ACGCCGCGCAACGTCAACGGAACCGCGCAATTCGTCGCGCCCGCCAGCCCCGCCGTAATCCCGTTGACCAACTCCACTTCGACACCTCGTTCACGCAGCC
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| Amino Acid Sequence |
>putative outer membrane porin A protein
MKLKNTLGLAIGSLIAATSFGVLAQGQGAVEGELFYKKQYNDSVKHIEDGFNPGARIGYFLTDDLSLNLSYDKTNHTRSNDGTGNQKIKGDTGSLVAQYH FGQAGVDSLRPYVEGGFGHQSRTNVQADGHSGRDQTTFATVGTGVKYYFTNNLYARAGVEADYGLDNGKWDYSALVGLGVNFGGNAGAAAPAPTPAPAPE PTPEPEAPVAQVVRVELDVKFDFDKSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDSVGPDAYNQKLSQRRADAVKQVLVKDGVAPSRITAVGYGESR PVADNATEAGRAVNRRVEASVEAQAQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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