Pseudomonas fluorescens SBW25, PFLU3146
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens SBW25 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GTGGAAGAGGCAATCATCAATGCGATCCTGGCCGGAGAGGACATGCTCACCGATCAAGGTGTGCTGGTCCCCGGCCTGAGCGGTGACACGCTGTTGTCGG TATTACACACAACAGGCTGGAGGGTGTCCCGTTAATAGGGGGCACGCGAAGTTATTAATACAAGTAATGGCCGTTTAATGTTGCTAATGACACCCTGGCA ATATAATGGATCCAATTATTAACAGCGCCAGACAACTTAGGCCGCGTTAGCGCTATTTAATATTTAAATAACCCAAGGTTGTTTTTGTCGGACAAAGTCA ACCCCGCCCAACAAACACGGCGCGCAAATTACTTAAGTTGTTTGCGCGCCCGAATCTAATGCTGGAAAAGATGTAGACGAAAGATTTCAAGTTGTGTCAG TTTTCTTACGCCTTCAAAAGAGGCGAGTGATAGGACGATCTCGCCCGCGGGGTGCCTATCGATCAAAGACTGAAGCACTTGCAAACAAGGAAGTACGTTT
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| DNA Sequence for Gene |
>PFLU3146
ATGTCAAAAGTAAAAGACAAGGCTATCGTGTCGGCGGCGCAAGCCAGCACCGCTTACTCGCAAATCGATAGCTTCAGCCATCTGTATGACCGTGGCGGCA ACCTCACGATCAATGGCAAACCCTCCTACACCGTTGACCAGGCAGCCACCCAGCTGCTGCGCGACGGCGCCACGTACCGGGACTTTGACGGCAACGGCAA GATCGACCTGACCTACACGTTCCTGACATCGGCCTCTTCGAGCACCATGAACAAACATGGCATCTCGGGTTTCAGCCAGTTCAACGCACAGCAGAAAGCA CAGGCCGTACTGGCCATGCAGTCCTGGGCGGACGTGGCCAACATCACCTTCACCGAGAAAGCCAGTGGCGGTGACGCCCACATGACGTTCGGCAACTACA GCGGCGGCCAGGACGGCGCGGCGGCCTTCGCCTACCTGCCCGGCACCGGTGCAGGCTACGACGGCACGTCGTGGTACCTGACCAACAACAGCTACACGCC GAACAAAACCCCGGACCTGAACAACTACGGCCGGCAGACCCTGACCCACGAAATCGGTCATACCTTGGGCCTGGCCCACCCGGGCGACTACAACGCCGGA GAAGGCGCCCCAACCTACAACGACGCGACCTATGGACAGGACACGCGCGGCTACAGCCTCATGAGTTACTGGAGCGAAAGCAACACCAACCAGAACTTCA GCAAAGGCGGGGTCGAGGCCTACGCGTCCGGCCCGCTGATCGACGACATCGCGGCGATCCAGAAGCTCTACGGCGCCAACTACAACACCCGCGCCGGTGA CACCACCTACGGCTTCAACTCCAACACCGGGCGTGATTTCCTCAGCGCCACGTCGAATGCCGACAAGCTGGTGTTCTCGGTGTGGGACGGTGGTGGCAAC GACACCCTGGACTTCTCCGGCTTCACCCAGAACCAGAAAATCAACCTCAATGAAGCCTCATTCTCCGACGTTGGCGGCCTGGTGGGCAACGTGTCCATCG CCAAGGGCGTGACCATCGAGAACGCCTTCGGTGGTGCGGGCAATGACCTGATCATCGGGAACAACGCGGCCAACATCATCAAAGGTGGCGCCGGCAACGA CCTCATCTACGGCGGTGGCGGTGCGGACCAACTGTGGGGCGGCGCGGGCAACGACACCTTTGTGTTCGGTGCCAGTTCCGACTCCAAGCCTGGGGCGTCT GACAAGATCTTTGACTTTACCTCGGGTTCGGACAAGATCGACCTGTCCGGCATCACCAAGGGTGCAGGCCTGACCTTCGTCAATGCCTTCACCGGGCATG CCGGCGATGCGGTACTGACCTACGCCGCAGGCACCAACCTGGGCACCTTGGCAGTGGACTTCTCCGGTCACGGCGTGGCGGACTTCCTCGTCACCACCGT TGGCCAGGCTGCTGTCAGCGACATCGTGGCGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGCACGGGCGCGGCGCTTCGGCGCCGCGCTTTACGGATGGAGCATGAAGATGCAGCGTTTTTTCAATAGGATCGCCTGCGTATTGCAGGTGATGTTCGTG TCGGCAGGAGCCCACGCAATGGCGAGCAGTCTTGTATTACCCACCACCGCCCAGTTGGCCGGGCATTGGCAGTTGCACCAGCAGGACCAGGTGTGCGCGC TGGACCTGCTGGAGCAGGCCAACGCGTTGGGCGGCGACGTGGCGTGTGTCGAACAATGGTTGGGCGCCAAGCCCCTGACCTGGACGCCAACGCCGGACGG CATCTGGCTGATGAACGCCGAAGGCAGTGGCATTACCCACCTTAACCGGCAAAAAGAAGGCGAATATAAAGGACGCACGCCCACCGGCCTTGAAGTGGTA TTGCAACGTACACCTTAGTTGCCGTTTTAAACCGATCACTTGATTTTATTAGTTGACCGCTCCGTCATTCGGGGTCGGGGCAACTATTGCGCGCAATTTG
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| Amino Acid Sequence |
>metalloprotease
MSKVKDKAIVSAAQASTAYSQIDSFSHLYDRGGNLTINGKPSYTVDQAATQLLRDGATYRDFDGNGKIDLTYTFLTSASSSTMNKHGISGFSQFNAQQKA QAVLAMQSWADVANITFTEKASGGDAHMTFGNYSGGQDGAAAFAYLPGTGAGYDGTSWYLTNNSYTPNKTPDLNNYGRQTLTHEIGHTLGLAHPGDYNAG EGAPTYNDATYGQDTRGYSLMSYWSESNTNQNFSKGGVEAYASGPLIDDIAAIQKLYGANYNTRAGDTTYGFNSNTGRDFLSATSNADKLVFSVWDGGGN DTLDFSGFTQNQKINLNEASFSDVGGLVGNVSIAKGVTIENAFGGAGNDLIIGNNAANIIKGGAGNDLIYGGGGADQLWGGAGNDTFVFGASSDSKPGAS DKIFDFTSGSDKIDLSGITKGAGLTFVNAFTGHAGDAVLTYAAGTNLGTLAVDFSGHGVADFLVTTVGQAAVSDIVA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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