Pseudomonas fluorescens SBW25, PFLU3146

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0004222 metalloendopeptidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00413
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008270 zinc ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00413
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0031012 extracellular matrix
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00413
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006508 proteolysis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00413
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005509 calcium ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00353
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005615 extracellular space
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08548
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008237 metallopeptidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.40.390.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00235 col_5 IPR006026 Peptidase, metallopeptidase 64 235 1.5E-22
FunFam G3DSA:3.40.390.10:FF:000046 Serralysin - - 31 261 3.3E-119
PRINTS PR00313 NodO calcium binding signature - - 341 352 1.9E-12
PANTHER PTHR10201 MATRIX METALLOPROTEINASE - - 56 276 1.7E-11
PRINTS PR00313 NodO calcium binding signature - - 362 370 1.9E-12
Gene3D G3DSA:2.150.10.10 - IPR011049 Serralysin-like metalloprotease, C-terminal 25 474 0.0
Pfam PF00413 Matrixin IPR001818 Peptidase M10, metallopeptidase 97 197 1.1E-7
SUPERFAMILY SSF51120 beta-Roll IPR011049 Serralysin-like metalloprotease, C-terminal 260 471 1.12E-50
PIRSF PIRSF001205 Serralysin IPR016294 Peptidase M10B 1 477 0.0
PRINTS PR00313 NodO calcium binding signature - - 380 389 1.9E-12
PRINTS PR00313 NodO calcium binding signature - - 371 379 1.9E-12
Gene3D G3DSA:3.40.390.10 Collagenase (Catalytic Domain) IPR024079 Metallopeptidase, catalytic domain superfamily 31 261 0.0
NCBIfam NF035945 NCBIFAM: serralysin family metalloprotease - - 18 476 0.0
CDD cd04277 ZnMc_serralysin_like IPR034033 Serralysin-like metallopeptidase domain 70 258 1.79174E-44
Pfam PF08548 Peptidase M10 serralysin C terminal IPR013858 Peptidase M10 serralysin, C-terminal 259 475 1.9E-74
Pfam PF00353 RTX calcium-binding nonapeptide repeat (4 copies) IPR001343 RTX calcium-binding nonapeptide repeat 352 386 2.2E-10
SUPERFAMILY SSF55486 Metalloproteases ("zincins"), catalytic domain - - 18 257 9.36E-71

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.