Pseudomonas fluorescens SBW25, PFLU0621

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00072
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.50.2300 - - - 111 241 4.1E-7
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 373 536 2.2E-44
CDD cd00156 REC - - 252 352 7.04192E-24
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 125 237 0.059
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 132 240 1.18E-5
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 378 532 1.1E-38
PANTHER PTHR45138 REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM - - 73 538 2.0E-86
Gene3D G3DSA:3.40.50.2300 - - - 242 374 1.0E-27
FunFam G3DSA:3.40.50.2300:FF:000346 Diguanylate cyclase response regulator - - 246 374 1.3E-56
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 371 538 4.7E-48
SMART SM00267 duf1_3 IPR000160 GGDEF domain 365 536 2.0E-50
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 381 534 2.82E-45
CDD cd01949 GGDEF IPR000160 GGDEF domain 378 534 5.93376E-57
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 251 362 9.6E-22
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 249 362 3.3E-27
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 375 542 2.6E-50
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 247 378 2.42E-30

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.