Pseudomonas fluorescens F113, PSF113_5204
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens F113 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ATCCCTCGCCAGTTGGCAGCAGGAATTCGCTGCGGGGCAGCACGATGGCCGCTGGAAGTGCCTGATCGCCATGGAACACGACCAGTTGCTCGGCGGCGCT TCACTGGCCAGCCACGACCTGCCTGACCAGCCAGCGCTGGGCCCGTGGCTGGCATGTGTGTTCATCACCCCTGAGGCTCGACGCAGAGGGCTTGCGGCGC AGTTGATCGAAGGCATCTGCAACCATGCGCGAGAGGCTGGAGTCATCACCTTGTTCCTGCACACCCACAGCCAACGTGATTATTACGCCAAGCTGGGTTG GGACGTGTTGGAACGCTTTGAGGCTTGGGGGAAAGAGCAATGGCTGATGGCGCGGTGTTTATAGCCATCGATGGGACTCCCACGCCAAGCGTTTAAAATT TAGCGAATCGCCCTACATCCTTCGTCCCCTTCCCCTGACTTAATTCCCCTGTCATCCCCGGCAAAGTCTCGCGTTCGTCCCCGCACCGCGAGATTCCTGC
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| DNA Sequence for Gene |
>PSF113_5204
ATGTTTGCCCCCGACAAACTCCTGGCCCTGAACAACACCATTGGCTTGCTGGTGGTGGCAGCCATGGACCCCGAGCAGCCGGATGTCGATGCGGTTTTCC AGGATTTTCGAACCTGCCTGAACGACTACGACGCCTGGGCTGAAAGCTTCTGGACCGGTTGGGCGTTGGATCTTGAGCAAGTGTTCAAGGTGGGCAACGA GGTGTCCCTGGCGGCGCCGAAAAACCTCGACACACCCATCAGCGCCACGGTGGTGGCCTGCCCGGCGGAGGGGCCGCTGACGCTGGTGCACATGTTCCAG GCGGCGCGCTTTGTACCGATTGGTGATACACCGGTGATGCTGGAATCGGTCATCGATGGCGCGCCGGGGCAGGAAACGTTCGGTGAGCCGATCCATCACG TAATCGGCCCCAGCGGCATCCTGGAAGTCCGTGAGTGTTGGCGGGGCCAGCGTTATCGCATCACCTTTTTCCCCCATGTAACGGCTGACCATGTCAAGGC GTTGTATGCGTCTTACCAAGGCGTGATCGGCGAACTCGAGGGCTGGCTGAAAGCGGAGTGGGAGCAGTTTCAACCGCTATGGAAGGAGTTTGCCGACGCC GGCTTTCTCGAACGCTACGGCGTGTTGCAGCAGGCTGATTGGCACGGCTTCGAAAAGGCCCTGCATCAGCTATGGGATGACGTAAAACAGGTTTTCGGGC TGCTGGCCGACCTGCAAGCCAACAGCGAAAAGCTGTTGGAGTACCTGACTCAAGCTGAGCTTGAACAGTTACTGAAGGCGTCCTCCGAGGCGATCGCCAA AGGGTTGATGATATTGAGCGACGAGCCGTTGCTCTTCGTCCACATGGCGGCTTTCGCCAGTTGGCTGCGGATGCTGCCGCCCCAGTACCTGGCTGAAGTC GTCGCAGAGTTGCGCGCTTCGGTACTGATCAATTTCCTGCTGATGCGTTTGACCGGGGGGCTGGGCCTGGGTCTGCGCATGAGCGGTAACGTGCTGGGCC GTGTCCGCTCGGAGAGGGCCCGGGAGTGGTTGCTGGCGTCGAGCCTGAGATTGGGCCAACTCGCCCCCGACCGGCTCAATCAACATGCCGATGTGCTCAA ACCGTTGGTCATCAGCCAGCGCGCGCCTTTAAAACCGACGCCTGTCGGACCTTTGCACATCACCCCCGAACACTCTGCACCACTGTCCGTCAGCAATCCG GCCGCTGTGGCGCGGGAAAAGTCTCAAGGGGCCACCCGGCTAAGCAAATACGAACCCCACGACGACGCCCCCACCCAATCGAAAAACCCCAACGGCGACC CCGCCGACACCGCGTCCCAGACCCAGACCAGCGGCTGCCCGGTGTCGATGGTCACCGGCGAAGAACTGCTGACCCTCGACGATGGCACCCTCGATGGCCG CTTGCCGTTCGTCTTCACCCGTTTGTACCGCACCAGCGCCGCCGACCTGGATGTCGGCCTCGGGCGCGGTTGGAGCCATGCCCTGGCCCATCGCTTGGAA CTCGACGACGAGCAGGTCACCTGGGTCGACCAGGAGAACCGCCGCACGATCTTTCCACTGCCCAGCGCCCAGCGTCCGGCGATCCACAACAGCCTGGCCC GCGCGGCGATCTACTTGGGCACCGAGGCGGACGAACTGATCGTTGCCCAACCCGGCGAAAACGCCCCATTCCTGCACTTTCGCGACGGCCATCTGGTCGC CCTCAGCGACCGCTACGACAACCGACTGACCCTCCAGCGCAACATCCATGGCGACATCTGCCGTTTGGACAATGGCGCCGGGCGCGCCCTGCGCCTGCGT TACGAGCAGCGCCACCTGATCGCCGTCGATTACCAGAGCTTCCATCCCGCTATCACCCTCGACGAAGCCTGGCGGACCGAACAGACGCTGGTTTCCTACC GCTACGACGGACGTTTCCGACTGATCGAAGCGACCAATGCCGCGGGTGAAAGCGAACGCTACGACTACGACGACCAACACGTCATCCTCCAGCGACAACT GGCCGGCGGGGCGAGCTTCTACTGGGAGTGGCAAGGCCTCGGACCGGCGTCCCGCTGCGTACGGCACTGGGCCTCGTTTGCGCAGATGGACAGCCGCTAC ACCTGGGGCGAAGACGGCAGCGTCACGGTCCGGCACCTGGACGGCAGCCAGGAGGTGTATGTCCACGACGACCGGGCGCGGCTGGTGCGCAAGGTCGAGC CCGACGGCGGTGAGCACCTCAAGGCCTACGACGAACAAGGTCGCTTGATCGCCGAGCAGGACCCGCTGGGTGCCCTGACCGAATACCGCTACGACGACGT CGGACGGCTGGTGGCGCTGCTTCCCCCGGACGAGACGCCGACGTCCTACGAATACCGCAACGGTTTCCTGCACACCCGTGCGCGCGGCAAGGCCGTGTGG AGCTACCGGCGCAATGCCCGCGGCGACGTGATCGTCCTCATCGACCCGGACGGCCGGCGCACGGAATATGCCTACGACGTCCACGGACAACTGCTGGCGA CGTATGACCCGGATGGCGCTGAACATCGCTTCACCTGGAGTCGCCTGGGCCAACTGACCGAAGAGATCCTGCCCGACGGCAGTCGCCGGTGTTTCTCCTA CGACGCCCTGGGACGTTTGCTCAGCCGCCAGGACGAACACGGCGCGCTCACGCACTACCAATGGGACGCCGTCGGCCGCCTGCTGCAGGTGACCTTGCCT AACGGTGCCACCCGAACCTGGCGCTACAACGCCTACGGCAAGGTCACCGCCGAGTGCGATGAACAAGGGCGGGTCACCCGCTACGAATACGCCGACGACC TGCACCTGGTCAGCCGCCGCCTGAACCCCGACGGCAGCGAGCTGAAGTACCGCTACGACTCGGCGCGGCTGTTGCTGACCGAGATCGAAAACGAATCCGG CGAAAAATATCAGCTGGACTACACGCCCAACGGCTTGATCCGACAGCAAGTCGGCTTCGACGGCCAACGCACCGCCTACGCCTACGACCTCAACGGCCAC CTGCTGGAAAAAACCGAGCACGGCGAGGACGGTTCGCAACGGCTCACCCAGTACCAGCGCGACGCGGCCGGGCGGCTGCGGGTCAAGACCTTGCCCGACG GCCAGGCCATCGAGTACCGCTACGACGAGCTGGGCCGGCTGGTCCACGTCAACGACGGCAGCAATCATCCGCTGGCCTTCGAATACGACGCCCAAGACCG ATTGGTCTGCGAGCACCAGGGCTGGGGCACCCTGCGTTATCGCTACGACGCTTGCGGGCGCCTCAACCACCTGCGCCTGCCGGACGACAGCCAACTCGAC TACCACCATGCCCCAGGTGGTGCACTGACCGCCATCGACCTCAACGGCTCGCGCCTGACCGAACACCGCTTTGTCGGCGGTCGCGAACGGCAACGTCAGC AAGGCCGGCTGCTCAGTGACTACACGTACGACGAACAGGGCCGCCTCAAGGCCCAGACCGTGTGGCAGAACCAACAGCAGCAACTGTTCTGGCGCGATTA TGCCTACAGCGCCAAGGGCAACCTGCAAACCCTTTCCGACAACCGAAACCGCCGCAGCTATCAGTACGATCCGCTGGATCGCCTGACCCGCATCGACTTT TCCCACAGCGAACCGCCGGAACACTTCTGCCACGACCCGGCCGGCAACCTGCTGATGCAGGACCGCCCCGGCCCGACCACCCTCAAGGGCAACCGCCTGC TGAAGGAGGGCGACCGCCACTACGACTACGACGCCTTCGGCAACCTGATCCGCGAACGCCGCGGCCAGGCCCTGGTCAGCGCTTACCGCTACGACAGCCA ACACCGCCTGATCGGCGTCACCACGGCCGATGGCCGCGAAACGTCCTACCGCTACGACGCCTTCGGCCGACGCATCAGCAAGGCCGTGGACGGCCTGACC ACGGAGTTTTTCTGGCAGGGCGACCAGGTCGTCGCCGAAAACAGCCCACGCCACCACCGCAGCTACGTCTACGAACCCGGCACCTTCCGCCCACTGGCGA TGCTCGATGGCGAAGGCCCGGAAAAAGCCACGCCGTTCTACTACCACCTCGACCACCTGGGCACGCCCCAGGAACTGACCAGCCACAGCGGCCAGATCGT CTGGTCAGCCCGCTACAGCGGCTACGGCCAACTCACCGAACTCCAGCACGGCGGCGGCGAACAGCTTGAGCAACCGCTGCGCTTCCAGGGCCAATACTTC GACCCCGAAAGCGGCCTGCACTACAACCGCCACCGCTACTACAATCCCGAGACCGGCCGCTACCTGACGCCCGACCCGAGCAAGTTGGTGGGTGGGCTCA ATGGGTACCGGTACACCCTGAACCCGACGGGGTGGGTGGATCCGTTGGGGTTGGTGGATTGTCCGGGGAAGGGTGGGTGTAGGCCGGGGGTTGGGGAGCA GGATCCGGCGGGTAAGGTAGCTGTTGATCAAACGGAACCTAAACTACCTACTCCTAAAAAAGAGGAGGATTTCTTATATCGTGGTGATGAGCGAAATCCC GAAGACGTTTTTGAACATGGCTTTAAAAGCAAAGGTAAAAGCAAAAATTTGTTCTTGCATTCTATGGATAGTGACTCGCCTCCTAGTTATTACATTAGTA CCTCCTACTCAAGAGATGTGGGGAAGAGGTTTGCTACCGGTGAGTACACTAAAATAGGGTATTTATACACGTTGCAAAAAATTCCAGGGCACGATTTGCA AAAAGAGCTAGGGGGCGCATATTTGTTTGAGGCTGAAAAAGAAATTGCAATTCCAGGTCGTATAAAAAATGAAGATGTGCTTGGTGCGACCTTGATACTT GATAACGGAAAAGAGTTTGGCTACTCCATACCTAATCCTAATAGGAGAATAAAAAAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTTCTAAGGTGGAGGTATATGTCTCTAGGGGGGGAGAAAAGGAAAAGACTTGCCTTGTGTGCGATTCTAAGAGTATCGCAATAACTTTTTCTGTGGCAGA TGGTGTTGATAGAATATATTCTGGTGGCAATTTTTATAAATGTTTTGCGAGTCTTAGGCGAGACAATCCGGATGTGATTTTCTTTTGTAAAGGTGCGAAG AAAAATGTTCATCCGTCTGGGATGTCGGCACAGATGTCGCTTGGGCTAAAAGCGTATGAGCTGAGCATGGGTGTCACCCCATCGCTCGATGATATTGTTT ATATATTTGACTATGATGAAAATAACTTGGCAAGCGATCCGGGTGAGCAAGAAGTTTTCTTTAGAGAATGGGTTAAGTCTCGTTTGTTATAGCTATGAGT GTGAGATTGCAATTCCTGATCGGATGAGGGCGGAAGATATTATCGGGATCACCCTACTCGTTTGATCGTTCCCACGCTCCTGCGTGGGAATGCATCCCGT
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| Amino Acid Sequence |
>Rhs family protein
MFAPDKLLALNNTIGLLVVAAMDPEQPDVDAVFQDFRTCLNDYDAWAESFWTGWALDLEQVFKVGNEVSLAAPKNLDTPISATVVACPAEGPLTLVHMFQ AARFVPIGDTPVMLESVIDGAPGQETFGEPIHHVIGPSGILEVRECWRGQRYRITFFPHVTADHVKALYASYQGVIGELEGWLKAEWEQFQPLWKEFADA GFLERYGVLQQADWHGFEKALHQLWDDVKQVFGLLADLQANSEKLLEYLTQAELEQLLKASSEAIAKGLMILSDEPLLFVHMAAFASWLRMLPPQYLAEV VAELRASVLINFLLMRLTGGLGLGLRMSGNVLGRVRSERAREWLLASSLRLGQLAPDRLNQHADVLKPLVISQRAPLKPTPVGPLHITPEHSAPLSVSNP AAVAREKSQGATRLSKYEPHDDAPTQSKNPNGDPADTASQTQTSGCPVSMVTGEELLTLDDGTLDGRLPFVFTRLYRTSAADLDVGLGRGWSHALAHRLE LDDEQVTWVDQENRRTIFPLPSAQRPAIHNSLARAAIYLGTEADELIVAQPGENAPFLHFRDGHLVALSDRYDNRLTLQRNIHGDICRLDNGAGRALRLR YEQRHLIAVDYQSFHPAITLDEAWRTEQTLVSYRYDGRFRLIEATNAAGESERYDYDDQHVILQRQLAGGASFYWEWQGLGPASRCVRHWASFAQMDSRY TWGEDGSVTVRHLDGSQEVYVHDDRARLVRKVEPDGGEHLKAYDEQGRLIAEQDPLGALTEYRYDDVGRLVALLPPDETPTSYEYRNGFLHTRARGKAVW SYRRNARGDVIVLIDPDGRRTEYAYDVHGQLLATYDPDGAEHRFTWSRLGQLTEEILPDGSRRCFSYDALGRLLSRQDEHGALTHYQWDAVGRLLQVTLP NGATRTWRYNAYGKVTAECDEQGRVTRYEYADDLHLVSRRLNPDGSELKYRYDSARLLLTEIENESGEKYQLDYTPNGLIRQQVGFDGQRTAYAYDLNGH LLEKTEHGEDGSQRLTQYQRDAAGRLRVKTLPDGQAIEYRYDELGRLVHVNDGSNHPLAFEYDAQDRLVCEHQGWGTLRYRYDACGRLNHLRLPDDSQLD YHHAPGGALTAIDLNGSRLTEHRFVGGRERQRQQGRLLSDYTYDEQGRLKAQTVWQNQQQQLFWRDYAYSAKGNLQTLSDNRNRRSYQYDPLDRLTRIDF SHSEPPEHFCHDPAGNLLMQDRPGPTTLKGNRLLKEGDRHYDYDAFGNLIRERRGQALVSAYRYDSQHRLIGVTTADGRETSYRYDAFGRRISKAVDGLT TEFFWQGDQVVAENSPRHHRSYVYEPGTFRPLAMLDGEGPEKATPFYYHLDHLGTPQELTSHSGQIVWSARYSGYGQLTELQHGGGEQLEQPLRFQGQYF DPESGLHYNRHRYYNPETGRYLTPDPSKLVGGLNGYRYTLNPTGWVDPLGLVDCPGKGGCRPGVGEQDPAGKVAVDQTEPKLPTPKKEEDFLYRGDERNP EDVFEHGFKSKGKSKNLFLHSMDSDSPPSYYISTSYSRDVGKRFATGEYTKIGYLYTLQKIPGHDLQKELGGAYLFEAEKEIAIPGRIKNEDVLGATLIL DNGKEFGYSIPNPNRRIKK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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