Pseudomonas fluorescens Pf0-1, Pfl01_4876

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.30.450.20 PAS domain - - 584 723 6.9E-21
SMART SM00086 pac_2 IPR001610 PAC motif 531 574 5.2E-7
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 450 581 3.8E-10
SMART SM00091 pas_2 IPR000014 PAS domain 722 788 7.5E-7
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 847 1008 1.8E-50
Gene3D G3DSA:3.30.450.20 PAS domain - - 463 577 1.8E-15
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 1023 1277 4.2E-102
CDD cd00130 PAS IPR000014 PAS domain 595 711 0.00288775
CDD cd00130 PAS IPR000014 PAS domain 475 571 1.16357E-5
SMART SM00086 pac_2 IPR001610 PAC motif 672 714 1.0E-4
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 1022 1278 2.7E-107
Gene3D G3DSA:3.30.450.20 PAS domain - - 724 847 2.4E-29
Pfam PF08447 PAS fold IPR013655 PAS fold-3 477 568 9.6E-11
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 582 721 2.9E-11
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 571 712 4.35E-17
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 848 1018 1.5E-61
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 842 1014 6.8E-45
SMART SM00091 pas_2 IPR000014 PAS domain 453 523 0.34
CDD cd00130 PAS IPR000014 PAS domain 731 833 2.17766E-11
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 1027 1274 2.09E-93
CDD cd01948 EAL IPR001633 EAL domain 1028 1266 1.81321E-117
CDD cd01949 GGDEF IPR000160 GGDEF domain 848 1010 9.81543E-62
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 726 842 2.6E-18
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 460 576 4.01E-14
Pfam PF13426 PAS domain IPR000014 PAS domain 734 835 3.4E-15
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 852 1013 2.9E-49
SMART SM00052 duf2_2 IPR001633 EAL domain 1022 1268 1.0E-127
SMART SM00086 pac_2 IPR001610 PAC motif 794 836 3.0E-5
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 734 844 1.94E-23
SMART SM00267 duf1_3 IPR000160 GGDEF domain 836 1012 4.8E-68
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 347 448 2.86E-5
Pfam PF13426 PAS domain IPR000014 PAS domain 598 713 3.8E-7
SMART SM00091 pas_2 IPR000014 PAS domain 586 652 1.8
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 722 1271 0.0
Pfam PF00563 EAL domain IPR001633 EAL domain 1028 1263 1.7E-76
Gene3D G3DSA:3.30.450.20 PAS domain - - 282 447 5.3E-6
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 844 1010 3.8E-40
Pfam PF13426 PAS domain IPR000014 PAS domain 348 439 1.1

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.