Pseudomonas sp. GM30, PMI25_004151

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. GM30 ctg14, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CAGGCTCTTGAAGGCTTTGGCGTAGTCGAAGTCCTTGCCCAGCGGATCGGACTTGGGCGAGTGCTGGCTGAGGATCTTCAGGTTCAGTTGATTCGGCCAC CAGTCACGGTTCGTCGTACCACCACCGGCGGCGTGGTTGAACGGGCATTTCGATTCGTTTGCCATGTTCGGGTCCTTATCAGGTCTTGTACGGCCGGCTC GTGCCGACTTCGGACTAGTAAGGCTAGACCCGACTCGGGCAGTCAGCTAATAGGCCGACTATTGGAGCTTGATAGCCGCAGTCTTTCAGCATTTGCCCGT ACTCGGACAGGTCGCTGCAGGCCCCGATTCGAGCCAGAAACTGCGTGCTTGAGGGCTCGCTGCAAAACGAATTGCAAGAATCGTGATGACAGAAAGAAAT GTTATTGTATAACATAAAAAAGATTTCATTCTGTTTCTGCCAGCGTTATTTGCCAAGCGCCGGCAGCGATCCTCACTTTTCTGCTCACGGAAGTTCTGAA
DNA Sequence for Gene
>PMI25_004151
ATGCCTGCCCGTTCCCAACCCCTTCAACGACGCCTGACTCCGCTGGCCGCCGCGCTGCTGATTGCCTCACCCGTGTTCGCTGCCGAACCGCTCGAACTGC AACCACAAGTCATCACCGGCAATCCTTTGGGCAGCCAGAGCCTCGCATCGCCCTCGACCGTGCTCAGCGGCGACGACCTTACGTTGCTGCAGAAGGGCAG CCTCGGCGAGACCCTGAACAAACAGCCCGGCGTGTCCTCGTCGTATTTCGGCCCGGGTGCGAGTCGGCCGATCATTCGCGGTCAGGACGGTGACCGCATT CGCATCCTGCGTAACGGCGTCGGCGCGCTGGACGCCTCGTCGCTGTCCTACGACCATGCGGTGCCGCTGGATCCGGTCAACGTCGAGCGCATTGAAATCG TCCGTGGCCCGGCGGCGCTGCTATATGGCGGCAGCGCGATCGGCGGGGTGGTCAACACCTTCGATAACCGCATCCCTACCGAAGCCATCGATGGCATTCA CGGTGCGGGTGAGTTGCGCTATGGCGGCGCCGATACTACCCGCAGCAGTGCGGGGAAACTGGAGGCCGGCAACGGGCAGTTCGCCTTGCACCTGGACGCC AGCGCCCGCGAGTTCAATGACCTGAAGATTCCCGGCTACGCCAAGACCGGCGCGGCACGCGCCAGCGACGACGGCGACTCGCGCAAGCATCGGCTGGCCA ACAGCGACGGTCGTCAGGATGGCGGCGCGGTCGGCGGTTCCTACACCTGGGATGACGGATACGCCGGTCTGTCCTACAGCAATTACGATTCGAACTACGG CTCGCCCGCCGAAGACGACGTGCGCATTCGCATGGAGCAGGAGCACTACGCGTTCGCCTCGGAAATCCGCAACCTCGACGGGCCGTTCAGCTCGGTCAAA CTCGACGCTGGCTACACCGATTACCAGCACCGAGAAATCGAGGGCGGTGAAGTCGGCACCACCTTCAAGAACAAGGGCTACGAAGCGCGGGTCGAGGCCC GGCATCAGCCGCTGGGGCCGTTTAACGGGGTGATCGGCGCTCAGGTCAGTCGCAACGAATTCTCGGCGCTGGGCGAAGAAGCCTTTGTGCCGCACACCGA TACTGACGCCGGTGCACTGTTCATTCTGGAAGAGTTGCAAGCCACCGAGCGTCTGCTGTTCAGCCTCGGCGGCCGATTGGAGCACACCACAGTCGACCCG GATGCCAAAGGCAACGAACGCTTTGCCAATGCCGACAAGTCGAGCAGTTTCACCGCCGGCAGCCTGTCGTCCGGAGCGGTGTATACGCTGACGCCGATCT GGTCGGTCGCCGCGACACTCGGCTACACCGAGCGCGCACCCACGTTCTACGAGTTGTACGCCAACGGTGCCCACGTCGCGACCGGCACCTATGAAGTCGG CGATGCCGGTCTGTCGAAAGAAAAAGCTGTGTCCAGCGACCTCGCATTGCGTTTCGACAACGGCACGCACAAGGGCAGCGTCGGCGTGTTTTACAGCCAC TTCTCCAATTACATTGGCTTGCTCGGCACCGGCCGCACATTGAATGACGAAGGCGAAGAGGATGCCGGCGGAATTCCCGAATACCGCTACTCGGGCGTGC GTGCCCGCTTCAGCGGCATCGAGGCACAGGATCGCTGGACGCTTGGCGAAAATGCCTACGGCAAGTTTGCTTTGGAGCTGTCGGGCGATTACACCCGCGC CAAGAACCTCGACAACGGCCAGGACCTGCCGCGCATCGCGCCGCTACGCTTGAACAGCGGTTTGTTGTGGGAGCTGGATCGCTGGCAGGCACGGATCGAT ATCGAACACGCCAGCTCGCAACATCGTGTGCCCGACAACGAAAGCAGCACCGATGGCTACACCACGCTGGGGGCGAATGTGGGGTATCACTTCGATGTCG GCCAGAGCAAATGGCTGGCCTTCGTCAACGCCGAGAACCTGACCAACCAGACCGTGCGCTACGCCAGCTCGATCCTGCGCGATGTTGCGCCGGCGCAAGG GCGCAGCATCCAGGTGGGATTACGCACGACGTTCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TAGCCCGTCGCCCCCCCGTGTAGGAGCTGCCGCAGGCTGCGATCTTTTGTATCTTGTATTTTTCAAGATCAAGATCAAAAGATCGCAGCCTGCGGCAGCT CCTACAGGGGGCATCAGCTTGACTGCACAGCCTCATCATCCGGCAAAACATCCAGTGGATCTTCCTGCCCCGGCAACTCAGTAATCACACTGAAATCCGT GACCTCGACCGCGCCCAGCCCATAACCGAGCAAGTGGAACGAAAAGGCCTTGCGCTGTTGCGGGTTGTCGAAGCTGAAATCCATCTGCAGCGGCTGATCG GCTGTGGCGACCATCTCGGTCGGCAAGCCCAGCTGCACGTCCTGTTCGAACTCCTTGGCCTTGAGCTGGATGTACGCCGCCTGTTGCGGATCCACCGAGC GTACGGTCAGGCGCACGCGGGTGTGCGAGCCCTTGGGCATTTCCAGATATTGCGCACCGATCAGGTTATCGGCCCAGTCATCCTTGATCTGCGCTTGCAG
Amino Acid Sequence
>TonB-denpendent receptor
MPARSQPLQRRLTPLAAALLIASPVFAAEPLELQPQVITGNPLGSQSLASPSTVLSGDDLTLLQKGSLGETLNKQPGVSSSYFGPGASRPIIRGQDGDRI RILRNGVGALDASSLSYDHAVPLDPVNVERIEIVRGPAALLYGGSAIGGVVNTFDNRIPTEAIDGIHGAGELRYGGADTTRSSAGKLEAGNGQFALHLDA SAREFNDLKIPGYAKTGAARASDDGDSRKHRLANSDGRQDGGAVGGSYTWDDGYAGLSYSNYDSNYGSPAEDDVRIRMEQEHYAFASEIRNLDGPFSSVK LDAGYTDYQHREIEGGEVGTTFKNKGYEARVEARHQPLGPFNGVIGAQVSRNEFSALGEEAFVPHTDTDAGALFILEELQATERLLFSLGGRLEHTTVDP DAKGNERFANADKSSSFTAGSLSSGAVYTLTPIWSVAATLGYTERAPTFYELYANGAHVATGTYEVGDAGLSKEKAVSSDLALRFDNGTHKGSVGVFYSH FSNYIGLLGTGRTLNDEGEEDAGGIPEYRYSGVRARFSGIEAQDRWTLGENAYGKFALELSGDYTRAKNLDNGQDLPRIAPLRLNSGLLWELDRWQARID IEHASSQHRVPDNESSTDGYTTLGANVGYHFDVGQSKWLAFVNAENLTNQTVRYASSILRDVAPAQGRSIQVGLRTTF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site