Pseudomonas sp. HPB0071, HMPREF1487_05139
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. HPB0071 genomic scaffold aczIi-supercont1.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCCGTTGATCACGGTGTTATTCATGTCATCCGTCATGCTGCCGTTGTTCCTGCCTGAAGGTATGAGCTTCGACAAACTCTTGCGGGCACTGATTGGCGTC ATCCTGTTCCAGTCAGCTTACATTGCCGAAGTCGTGCGTGGTGGTTTGCAGGCGATCCCGAAAGGGCAGTACGAAGCGGCGTCAGCCATGGGGCTGGGCT ACTGGCGCGCCATGGGGCTGGTCATACTGCCTCAGGCATTGAAGCTGGTGATCCCGGGAATCGTGAACACGTTTATCGCGCTGTTCAAGGATACCAGTCT GGTGATCATCATTGGTCTGTTCGATCTCTTGAACAGCCTGCACCAGGCTACCGTTGATCCAGCCTGGCTGGGTATGTCGACCGAAGGCTATGTCTTTGGC GCATTGATTTATTGGGCTTTCTGTTTCGGTATGTCGCAGTACAGTCAGCGTCTGGAACGCCGTCTCGACACCGGCCATCGCCGCTAAGGAGCGAATCAGC
|
|
| DNA Sequence for Gene |
>HMPREF1487_05139
ATGAGTGAAAATGCCAAGACTCTGGGCATCGGTGACAAGATCATGATCCAGATGCAAGACGTGAACAAATGGTACGGTCAGTTCCACGTGCTTAAGGACA TCAACCTGACGGTCCGACAGGGCGAGCGTATCGTGCTCTGCGGCCCGTCAGGGTCAGGCAAGTCGACCACGATCCGCTGCATCAATCGCCTGGAAGAGCA TCAGAAGGGCAATATTGTCGTTGATGATGTAGAGCTCAATGGGGACCTGAAAAACATCGAGGCCATTCGCCGTGAAGTCGGGATGGTCTTCCAGCATTTC AATCTGTTCCCTCATCTGACGGTACTGGAAAACTGTACGCTGGCCCCTATCTGGGTACGTAAGCTACCCAAGAAGGAAGCCGAAGAAGTCGCGATGCATT ATCTGAAGCGCGTACGCATTCCAGATCAGGCTCACAAGTATCCAGGACAGCTCTCCGGTGGTCAGCAACAGCGTGTGGCCATTGCCCGTGCGTTGTGTAT GAAGCCCAAGATCATGCTGTTTGACGAGCCTACCTCAGCGCTTGACCCGGAAATGGTAAAGGAGGTGCTCGATACCATGATCGGTCTTGCTCAGGATGGC ATGACCATGCTGTGCGTGACTCACGAAATGGGTTTTGCCCGAACGGTAGCAAACCGTGTGATTTTCATGGACAAGGGTGAAATCGTGGAGCAGGCTCCGC CGGATCAGTTCTTCGATAATCCTCAAAACGAGCGTACCAAGCTCTTCCTGGGTCAGATCCTTCACTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCCATCAAGAAAGGCGCCTCAGGGCGCCTTTCTTATTAGGCTGTCCTTTTACCGGGCCAAGCGAGAGAATACAGCTACGCTCTCTGGTTGAATGGCTTGC TGTACGTGGACGCCTTACCCTTATCCTTGACCATGACTCATCCGCTGCGGCCATGGTTCGTCTATCTGGTCAGAGCTGAAAATGGCTCACTCTACTGCGG CATCAGCAATGACCCTCAGCGCCGTTTCAAGGCTCACCAACAAGGCAAGGGGGCTCGTTTTTTTCATTCAAGTCCTGCCAAGGCACTGGTCTATACGGAG CCGTGTGTAGACAAATCTGCAGCGCTTCGCCGTGAACGCGCCATTAAAAAACTCAAAAAGAACATCAAGGAAGCCATGATAGTGGCTCAGGGAGGATAGT CTTCAAAGGGTAGGGCGGTTACTCTGCGCTTCTCCAATAAGAGGGCGTGCGCATGACCGATCTCATCCTGCATCACTACTGGACCTCTCCGTTTGCCGAA
|
|
| Amino Acid Sequence |
>general L-amino acid transport ATP-binding protein AapP
MSENAKTLGIGDKIMIQMQDVNKWYGQFHVLKDINLTVRQGERIVLCGPSGSGKSTTIRCINRLEEHQKGNIVVDDVELNGDLKNIEAIRREVGMVFQHF NLFPHLTVLENCTLAPIWVRKLPKKEAEEVAMHYLKRVRIPDQAHKYPGQLSGGQQQRVAIARALCMKPKIMLFDEPTSALDPEMVKEVLDTMIGLAQDG MTMLCVTHEMGFARTVANRVIFMDKGEIVEQAPPDQFFDNPQNERTKLFLGQILH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|