Pseudomonas sp. HPB0071, HMPREF1487_05088
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. HPB0071 genomic scaffold aczIi-supercont1.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGATCATGTACCGGAGTGGCTGGATGAGCTCAACGAGGCGGACATACCGGTCCAGTGGTCAATAGAAATCATGGGGCAACTCTGGCGCAAGCTTGCCAT CAACTGTGCCATCAACCCTTTAACGGTGCTCCATAAATGCCGTAATGGTGAGCTCAACGCCTACGCTGGCGAGATCAAAGCCCTCACCCTTGAACTGGGC GCGTTATTGGAGGCAGTCGGGCACGGAAACCTTGCCCCTGGCCTTCAGGAAGCGGTGCTGGCTGTAATTGATGCGACTGCCGACAACACCTCATCAATGC TTCAGGACGTTACTCATGGGCGTCGTACGGAAATCAGTTTTTTGCTTGGCCATGCACTGCAAGAGGCCCAGCGCCATGGACTCAAGCTGGGAGCCCTTGA GCAACTCCATCGCCACTTGATCGATCATCTGGAGACCCATGGATTGCCGGTAGACTAAGCGCAGGCTACCCTTTCCGATCCTATTGCAGCGATGTAAGCC
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| DNA Sequence for Gene |
>HMPREF1487_05088
ATGATTCTGCGCGAGCGACTCAGAAATCTTCCGGTTGGCCAGAAGTTGTTGGCTGCGCTTCTTGTACTGTTAAGCGCTGTGTTGCTGGTAGCTAACATTA CCTTCATCTCTGCAGCCTACTGGATTTCCCAGGAAAACATGACGCCCCAGGCGTTGCAAACGGTTGGCAGGCTGCTGGCAATCCCCACGCTGAGCCAGGA GGCGCTGAGCTCCAAGGAGCGGGCTGAAGCGCTTCTGCATCGACTCGACAATTACAGCCCGCTCCGCCTGGCCGCCATTTACAACCAGGACGGGCATCTA CTTGCCGAAATACAAAATGGCACGTTGCTAAAGCTGCCTACGCATTACACAAGCCTTGAAAACTGGCGCTTGCGTGAGTTTCGTACGAATGTGCTGATCG ACCTTCCTCAAGAAGATGGCCGCTCCGGCCATTTGCTGCTGGTCGCCAGCAGCGAGTTACCCGGGGCCTTCTATACCGGAACGCTGACCGCCAGTATCGC CATTCTGGTGTTCAGTCTCCTGCTCTGGTTTGTTGTGGCCAGACAGATTCGTCTGTTGATCACCCGGCCGATCCTTCAGTTGGAAGAGCTGTCTCGCCAG GTTACCCGCGAGGAAAATTACTCGCTGCGCGCTGGCAAGGGTAGTGACGACGAAATAGGTCGGCTGGCAGATGCTTTCAATACGATGCTGACCCGCATCG AGGGCCGCGAGCAACAGCTCAAACGCGCCCGTGATGACGCCCAGTCCGCAGTGCTTCAGGCTCAAACCCTGGCCGAAGAAACACGTCGCTCGAACCGAAA GCTCGAACTGGAAGTTCAGGTACGGGGCAAGATCGAGAAAAAGCTCACCGGCTTTCAAAATTACCTAAACAGCATCATCGACTCGATGCCATCGGCACTG ATTGCTGTCGATGAACAGTTCTATGTGACGCAGTGGAACCAGGAGGCAACCAACCTCTCAGGCACCAATCTGGATGAGGCGTTGAATCAACCTATTTTTC TGGCCTTCCCCTCAATCAAACCGTTTCTTCCCCAGCTAAGTCGCGCGGCCGAACATATGCGTGTGGAAAAAGTAGAGCGTGTCACCTGGGCGCTGATTGA CGCTCCCCGACATTACACGCTGACCTTTTATCCACTCATGGGCGGTGCCGGACGCGGAGTCGTCATCCGAATCGATGACATCACCCAGCGCCTGAACATG GAAGAGCTGATGGTGCAGTCCGAAAAAATGCTCTCGGTCGGTGGATTGGCTGCGGGCATGGCGCATGAAATTAATAATCCGCTCGGTGCCATCCTGCATA ACGTTCAGAATATCCGCCGCCGACTTTCACCAGAGCTTCCCAAGAATATCGATCAGGCAGCAGAGTGCGGCGTGGGACTGGAGGATGTGAACTGCTACCT GGAGGGACGGGAAATCCCCCGTCTTCTTGATGGGATTCATCAGGCAGGAAGCCGTGCCGCCAAAATCGTCAGTCACATGCTGGCTTTCAGTCGTCGAAGC AACCGCAAGATGGTCGCCTGCGACCTGCCCTCCCTGATCGACCAAGCCATCGAAATTGCTGGCAATGATTTTGACCTGGCAGAAGGTTTCGACTTCCGCG CACTCAATATCCAATGTGAATTTGATCCGGATCTGGGCCCCGTACCGGTTATTGCCAATGAACTTGAGCAGGTTCTCCTCAATCTGTTGAAGAACGCGGC CCAGGCCATTCATCAACGGGATGATGAAGAAGAAGGCGAAACGGGCCGTGTGGTGCTGCGTACATACCGCCGAGGCGATTGGGCAGAAATTCAGGTTGAG GACAATGGGATCGGGATTCCGGAATCAATTTGCAAGCGGATCTTCGAACCCTTCTTTACCACCAAGGAAGTGGGACAAGGGACCGGACTGGGTTTGTCCG TGTCTTATTTCATCATTACCAACAACCACAAGGGTCAAATGGAGGTCCATTCCAGATCTGGTGAAGGCACCTGCTTTACCCTGCGCTTGCCGCTCAATCA GCCGGAGGCAGGCAACAACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TACCAAGGAGCTTGTACATGGGCTATCGCCTGTCAAAAATCTACACCCGAACCGGTGACACAGGCGAAACAGGTCTGGCAGACGGCAGCCGCGTCCGCAA GGACCATCCTCGTATCGAGGCCATTGGTGATGTGGACGAACTCAATAGCATGCTGGGCGTTCTGCTTGCAGAGCTGGAGGATCAGCAGGTTCACATCCCC GAGCTTGCCTCCGTCATTGACGTCCTGGCGCCCTGCCAGCATCGCCTGTTCGATCTGGGTGGTGAATTGGCCATGCCAGATTATCGCGCGCTGGACCACG ATGAGATCGAACGACTGGAGCAGGCGATCGATACCTGGAATGAAGAGCTGGGGCCCCTGGAGAACTTCATCCTGCCCGGCGGTTCACGTGCCGTTGCGTT GGCTCATACCGCACGCAGCATCGCTCGACGTGCCGAGCGGCGTTGCCAGACGTTAAACCTAAGCGAGCCGCTCGAAGGTGTAGGGATGGCTTATCTCAAC
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| Amino Acid Sequence |
>PAS domain S-box protein
MILRERLRNLPVGQKLLAALLVLLSAVLLVANITFISAAYWISQENMTPQALQTVGRLLAIPTLSQEALSSKERAEALLHRLDNYSPLRLAAIYNQDGHL LAEIQNGTLLKLPTHYTSLENWRLREFRTNVLIDLPQEDGRSGHLLLVASSELPGAFYTGTLTASIAILVFSLLLWFVVARQIRLLITRPILQLEELSRQ VTREENYSLRAGKGSDDEIGRLADAFNTMLTRIEGREQQLKRARDDAQSAVLQAQTLAEETRRSNRKLELEVQVRGKIEKKLTGFQNYLNSIIDSMPSAL IAVDEQFYVTQWNQEATNLSGTNLDEALNQPIFLAFPSIKPFLPQLSRAAEHMRVEKVERVTWALIDAPRHYTLTFYPLMGGAGRGVVIRIDDITQRLNM EELMVQSEKMLSVGGLAAGMAHEINNPLGAILHNVQNIRRRLSPELPKNIDQAAECGVGLEDVNCYLEGREIPRLLDGIHQAGSRAAKIVSHMLAFSRRS NRKMVACDLPSLIDQAIEIAGNDFDLAEGFDFRALNIQCEFDPDLGPVPVIANELEQVLLNLLKNAAQAIHQRDDEEEGETGRVVLRTYRRGDWAEIQVE DNGIGIPESICKRIFEPFFTTKEVGQGTGLGLSVSYFIITNNHKGQMEVHSRSGEGTCFTLRLPLNQPEAGNN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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