Pseudomonas sp. HPB0071, HMPREF1487_05088

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Cellular Component	GO:0016020	membrane	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00672	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0016310	phosphorylation	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00344	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0000155	phosphorelay sensor kinase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00388	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0007165	signal transduction	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00672	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016772	transferase activity, transferring phosphorus-containing groups	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00344	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	IPR003594	Histidine kinase/HSP90-like ATPase	554	666	7.5E-24
Pfam	PF08448	PAS fold	IPR013656	PAS fold-4	294	397	1.6E-9
Pfam	PF00672	HAMP domain	IPR003660	HAMP domain	186	234	8.9E-9
PANTHER	PTHR43065	SENSOR HISTIDINE KINASE	-	-	261	670	6.6E-64
SUPERFAMILY	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	IPR036890	Histidine kinase/HSP90-like ATPase superfamily	502	666	2.23E-39
Gene3D	G3DSA:3.30.450.20	PAS domain	-	-	272	400	6.1E-15
Coils	Coil	Coil	-	-	552	572	-
PRINTS	PR00344	Bacterial sensor protein C-terminal signature	IPR004358	Signal transduction histidine kinase-related protein, C-terminal	595	609	8.9E-16
CDD	cd00130	PAS	IPR000014	PAS domain	296	394	0.00447199
SMART	SM00091	pas_2	IPR000014	PAS domain	287	355	2.0E-4
SMART	SM00388	HisKA_10	IPR003661	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain	412	502	1.4E-7
SUPERFAMILY	SSF158472	HAMP domain-like	-	-	186	234	4.71E-7
Coils	Coil	Coil	-	-	230	271	-
SUPERFAMILY	SSF55785	PYP-like sensor domain (PAS domain)	IPR035965	PAS domain superfamily	276	395	3.14E-11
Gene3D	G3DSA:3.30.565.10	-	IPR036890	Histidine kinase/HSP90-like ATPase superfamily	505	671	1.0E-40
SMART	SM00387	HKATPase_4	IPR003594	Histidine kinase/HSP90-like ATPase	550	667	3.5E-28
Pfam	PF00512	His Kinase A (phospho-acceptor) domain	IPR003661	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain	414	500	4.5E-10
Gene3D	G3DSA:6.10.340.10	-	-	-	156	243	5.5E-13
PRINTS	PR00344	Bacterial sensor protein C-terminal signature	IPR004358	Signal transduction histidine kinase-related protein, C-terminal	613	623	8.9E-16
CDD	cd00082	HisKA	IPR003661	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain	416	498	9.29172E-7
Gene3D	G3DSA:1.10.287.130	-	-	-	404	500	2.1E-22
NCBIfam	TIGR00229	JCVI: PAS domain S-box protein	IPR000014	PAS domain	288	402	8.6E-6
PRINTS	PR00344	Bacterial sensor protein C-terminal signature	IPR004358	Signal transduction histidine kinase-related protein, C-terminal	626	644	8.9E-16
PRINTS	PR00344	Bacterial sensor protein C-terminal signature	IPR004358	Signal transduction histidine kinase-related protein, C-terminal	651	664	8.9E-16
SUPERFAMILY	SSF47384	Homodimeric domain of signal transducing histidine kinase	IPR036097	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily	408	503	3.34E-8
CDD	cd06225	HAMP	-	-	188	233	1.02365E-8
SMART	SM00304	HAMP_11	IPR003660	HAMP domain	185	238	1.5E-7

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.