Pseudomonas sp. HPB0071, HMPREF1487_04575

Gene Feature Overview

Strain	Pseudomonas sp. HPB0071 GCF_000478505.2|latest
Locus Tag	HMPREF1487_04575
NCBI Locus Tag	HMPREF1487_RS01420
Name
Replicon	scaffold_1
Genomic location	275801 - 278188 (- strand)

Cross-References

RefSeq	WP_010794812.1
GI	498494075
INSDC	ENA37252.1
NCBI Locus Tag	HMPREF1487_RS01420
NCBI Old Locus Tag	HMPREF1487_04575
UniParc	UPI0002C9ADE1
UniProtKB Acc	N2JCB7
UniProtKB ID	N2JCB7_9PSED
UniRef100	UniRef100_N2JCB7
UniRef50	UniRef50_Q9KTD1
UniRef90	UniRef90_N2JCB7

Product

Feature Type	CDS
Coding Frame	1
Product Name	DNA ligase
Synonyms
Evidence for Translation
Charge (pH 7)	-16.86
Kyte-Doolittle Hydrophobicity Value	-0.218
Molecular Weight (kDa)	87.8
Isoelectric Point (pI)	5.24

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG003829 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: HMPREF1487_04575 Search term: DNA ligase

Human Homologs

References