Pseudomonas sp. HPB0071, HMPREF1487_04575

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006260 DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00575
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003911 DNA ligase (NAD+) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00575
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00278
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00575
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:2.40.50.140:FF:000012 DNA ligase - - 333 406 2.5E-34
SUPERFAMILY SSF47781 RuvA domain 2-like IPR010994 RuvA domain 2-like 420 611 5.93E-54
Hamap MF_01588 DNA ligase [ligA]. IPR001679 NAD-dependent DNA ligase 5 789 53.118378
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 474 493 33.0
Gene3D G3DSA:1.10.150.20 - - - 533 613 8.4E-25
FunFam G3DSA:1.10.150.20:FF:000007 DNA ligase - - 458 532 5.4E-29
SUPERFAMILY SSF47781 RuvA domain 2-like IPR010994 RuvA domain 2-like 626 706 3.56E-10
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 508 527 650.0
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 333 406 7.0E-33
NCBIfam TIGR00575 JCVI: DNA ligase (NAD(+)) LigA IPR001679 NAD-dependent DNA ligase 14 615 0.0
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 334 416 2.06E-28
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 540 559 160.0
Pfam PF12826 Helix-hairpin-helix motif IPR041663 DisA/LigA, helix-hairpin-helix motif 630 687 3.8E-9
CDD cd00114 LIGANc IPR013839 NAD-dependent DNA ligase, adenylation 9 333 0.0
PANTHER PTHR23389 CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 - - 16 785 7.1E-52
Gene3D G3DSA:3.40.50.10190 BRCT domain IPR036420 BRCT domain superfamily 704 790 1.1E-23
Pfam PF00533 BRCA1 C Terminus (BRCT) domain IPR001357 BRCT domain 715 787 3.0E-11
FunFam G3DSA:3.30.470.30:FF:000001 DNA ligase - - 68 331 1.2E-107
SMART SM00292 BRCT_7 IPR001357 BRCT domain 715 792 5.3E-10
Gene3D G3DSA:3.30.470.30 DNA ligase/mRNA capping enzyme - - 68 331 1.9E-100
Pfam PF03120 NAD-dependent DNA ligase OB-fold domain IPR004150 NAD-dependent DNA ligase, OB-fold 338 414 1.0E-34
Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type 423 462 4.1E-11
FunFam G3DSA:1.10.287.610:FF:000002 DNA ligase - - 2 67 6.6E-30
Gene3D G3DSA:6.20.10.30 - - - 407 457 9.1E-14
PIRSF PIRSF001604 LigA IPR001679 NAD-dependent DNA ligase 620 794 8.8E-33
FunFam G3DSA:1.10.150.20:FF:000006 DNA ligase - - 533 611 7.1E-26
SUPERFAMILY SSF56091 DNA ligase/mRNA capping enzyme, catalytic domain - - 4 332 3.24E-119
CDD cd17748 BRCT_DNA_ligase_like - - 718 787 5.14947E-24
Pfam PF01653 NAD-dependent DNA ligase adenylation domain IPR013839 NAD-dependent DNA ligase, adenylation 7 334 1.4E-127
SUPERFAMILY SSF52113 BRCT domain IPR036420 BRCT domain superfamily 714 789 7.29E-19
PIRSF PIRSF001604 LigA IPR001679 NAD-dependent DNA ligase 1 625 0.0
Gene3D G3DSA:1.10.150.20 - - - 458 532 1.6E-26
Gene3D G3DSA:1.10.287.610 Helix hairpin bin - - 1 67 4.0E-29
SMART SM00532 ligaN3 IPR013840 NAD-dependent DNA ligase, N-terminal 6 476 0.0
Gene3D G3DSA:1.10.150.20 - - - 626 703 3.8E-11
Pfam PF12826 Helix-hairpin-helix motif IPR041663 DisA/LigA, helix-hairpin-helix motif 538 601 8.3E-22

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.