Pseudomonas sp. GM41(2012), PMI27_003922
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. GM41(2012) ctg4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTTCGGAATCAGAACGATTTCTCAATTCTGCGCCGTCAGCCGTTTCCCGCTCTTTCTATCTTGTGTTTACAAAAGAGACGCGCACAAAAAAGGCCACTCT TTCGAGTAGCCTTTTTTGATATTTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGACTGCTCCATCCCGCG TCTGTGTGTCGGCATTCTACAGAGGATCGACAGGCTGTCAACCTTCAGTCCAGAGAAAACCTCTTCCCGTTCAATCGCTTAGCTAGAAACCAGGGCTGAG TGATTGGCTGTAAGGCCGGTGTGGCAAGGCTTTCGGTTCTATCAGGTGCAGCTTTTCGATTAAGAAAATAAATTTATCGGCGCTTTTCCTACAAGTAGAA AAGAACATTCAGAGTACTGGTGCTATATACAGGTGTCAGTGAGATACTGCCGATCTGACTCGCCAGTACGCCATTTCTTCACCATGAACACTGCTTTTAT
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| DNA Sequence for Gene |
>PMI27_003922
ATGACGCAGCGAAAAATCATCCACGTCGATTGTGATTGCTTCTACGCCGCCATCGAGATGCGTGACGACCCGCGCCTGGCCGGGAAGCCTCTGGCAGTGG GCGGTTCCGCGGATCGACGTGGAGTGATCGCCACCTGCAATTATGAGGCGCGGGCTTATGGGGTGCGCTCGGCCATGTCTTCCGGACATGCCTTGAAGCT GTGCCCGGACCTGACCATTGTCAAGCCGCGCATGGATGCCTATAGAGAAGCCTCTAAGGAAATTCACACGATCTTTCGCGATTACACCGACTTGATCGAG CCGCTTTCCCTGGATGAGGCCTACCTCGACGTGTCTGACAGCGCGCATTTCGGTGGCAGCGCCACGCGGATCGCCCAGGACATTCGCCGTCGTGTCTCTA ATCAACTGCACATCACTGTTTCAGCGGGCGTTGCGCCAAACAAGTTTCTGGCCAAGATCGCCAGCGACTGGAAGAAGCCCAACGGCTTGTTCGTCATTAC GCCGGATCAGGTCGAGGATTTTGTCAGTGGTTTGCCGGTGAGCAAGTTGCACGGCGTTGGCAAAGTGACCGCAGACAAATTAGGCAGGCTTGGCATCGTC GATTGTTCGCATCTGCGCGAATGGGACAAGTTGGCGCTTGTGCGCGAATTCGGCAGCTTCGGCGAGCGACTCTGGAGCCTGGCTCGTGGGATCGATGACC GATTGGTGCACAACGACAGTCGTCGGCAGTCAATCAGTGTCGAAAACACCTACGACGTGGACTTGCCGGATCTGGTGAGCTGCCTCGATAAATTACCCGA GTTACTGGAAACCCTGGCCGGCCGCATGGCGCGAATCGACAGCAGCTATCGACCGGGCAAGCCGTTCGTCAAAGTGAAATTCCATGACTTCACCCAGACC ACTCTGGAGCAGGCCGGGGCAGGGCGGGATTTGGGGAGCTATCAGTTGTTGCTGACCCAGGCGTTCAATCGTGGCGGGAAGCCGGTGCGGTTACTGGGAA TTGGGGTACGGCTGGAGGATTTGCGGGGCGGGTTTGAGCAGATGGAGTTGTTTGAGCGTTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTCGGTGGTGAATGTCAGGACCTCTTCGCGGGCAAGCCTCGCTCCTACAAATTTATGCTTTCTGTAGGAGCGGGGCTTGCCCGCGAAGCTTTTGCTTTTA ATTCGGTCCCGGATCCGCGACCAGTCGCCCAGCATCCTTGGTCAATGACTTGAGGAATTCGGTCTGCAGCTCGGGGTCGTTGCGCGTCAGTTCGATCAAA CTCTGTTCCAGTTCGGTCGCTTCTTCTTCCAGCCCCAGTTCCGACAAACGTTTGACCCGGTGTACCCACTGGCTCACTTCGTCGTCTTCGAGGTCGTCGT AAATCAGCCCGTGAGCTTCGAGCAGCTTGCTGCGCAAGGAGCTACTGACCGCCAGAGACGAATTGGTGTGCACCTCGTCCTGAGCATCCTGGACACTGAT CAGCAGCCGGCTCAGATGATTGATGTCGTGTTCGGCGAACGGGCTGTCCAGCAGGTTCACGCGCAATACACCGTTTTTGTCGGTGCTCATCTCGAACGTT
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| Amino Acid Sequence |
>DNA polymerase IV
MTQRKIIHVDCDCFYAAIEMRDDPRLAGKPLAVGGSADRRGVIATCNYEARAYGVRSAMSSGHALKLCPDLTIVKPRMDAYREASKEIHTIFRDYTDLIE PLSLDEAYLDVSDSAHFGGSATRIAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVEDFVSGLPVSKLHGVGKVTADKLGRLGIV DCSHLREWDKLALVREFGSFGERLWSLARGIDDRLVHNDSRRQSISVENTYDVDLPDLVSCLDKLPELLETLAGRMARIDSSYRPGKPFVKVKFHDFTQT TLEQAGAGRDLGSYQLLLTQAFNRGGKPVRLLGIGVRLEDLRGGFEQMELFER
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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