Pseudomonas taiwanensis DSM 21245, H620_RS0122120
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taiwanensis DSM 21245 H620DRAFT_scaffold00003.3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCGGTGACGCCGGCTCAGGGCCGGGCTGCTCGTGAGTTGACTGCCAATCAGCAACTGGTCTATGCCGAGGGACGGCCAGGCGAGACCTTGAGTGTGGAC AGCGAAACCCGCTTGGCTTGGCGCCAGGGCTGGCTCAATTACTACCAGGTGCCGTTGGCGCAAGTGGTCGAGGATCTGGGGCGTTATTACCCAGGCCGTA TCCTGCTGCTCGATGAGCAGTTGGCTCAACGCAAGGTCAGTGGCAGTTTCCCGGTCCAGGACCCTTTGTTGGCGCTGGACTCACTGGGCAAGGTGCTGGG CTTCTCGCGTCAGACGGTCCTTGGGCGTCTGACTGTTGTTCGGTAAGTGTGCAAGCCCAGGGAGGAGCCGGCCTGCCGGCGATGCGGCCGACACAGGTAA AAAATGTTCAAAACAAGGTGAGGTAACGGAACCTGGCGTACGTGTAATGAGTGGAAGTGCGATTCATTCGCAGTAATAACCCTCTCACAGGTCAGCGTCC
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| DNA Sequence for Gene |
>H620_RS0122120
ATGAAGTTCACCCCGCGTTGCATTCCTCTCTGCTTCGGCCTCGCGGCGCTTGGCGCCTTGCCCGTCGCCCCGCTGGTGCAGGCCGCCGAGCAGGTTCAGT TGTATGCCTTCGCTCAGCCCAGCCAACCTTTGGCTCAGGCAATCAACGCTTTCAGTCGCGCCACTGGCCAGAGCGTGGTTTATACCCTTGAACTGCCTGT CATTCAGGCGCCGGCACTCAACGGCAGCTTCAGTGCCGAGCAGGCATTGCAGCAGTTGCTAGGTAATTCCGGCCTGACCTGGCGGCGTGTCGATGCCCGT ACCTTGACCCTCGAACCTATGGACACCTCGGGCGCGCTGAACCTGCAAGCCACCACGGTGACCTCGCAGATGGACACCCACAGCTACCAGCCACCAGCGG TAGCATCAATCATGCGTGGGCAAGGACCGACGCAGGACATACCCCAGGCTATCAACGTGGTTCCGGCGCAGGTCATTCGCGACCAGGCCCCACGCAACCT CGACGATGCGCTGACCAACGTCAGCGGCATCACCCAGGGCAACAATTTCGGCGGCACCGCCGACACCGTGATGAAGCGCGGCTTTGGCGACAACCGTGAC GGTTCGATCATGCGCGATGGCATGCCCATCGTGCAGGGCCGAAGCCTCAATGCCAGCACCGAGCGGATCGAGGTGCTCAAAGGTCCGGCCTCGCTGCTGT ATGGAATCCAGGACCCAGGTGGCGTCATCAACGTGGTCAGCAAGCGGCCACAATTGGAGCAGTACAACGCGCTGACCGTTCGAGGCTCCACCTATGGGAG CGGCAAGAACGGCAGCGGTGGCGGGTTCGACAGCACCGGCGCGTTGGGTGACAGTCAATTCGCCTACCGCCTGATCGTCGATCATGAAGACGAAGACTAC TGGCGCAATTACGGCGTGCATCGCGAGTCTTTGGTCGCGCCGTCGCTGGCCTGGCTGGGCGAAGACACCCAAGTGGTACTGGCCTATGAGCACCGCGAGT TTCTCTACCCCTTCGACCGCGGCACCGCCTTCGGCAGCGATGGCCATCCGTTGAACATCCCGGCCACCCGGCGCCTGGACGAGCCGTTCAACGACATGCA AGGGCGCTCTGATCTCTACCGTCTGGAGGTCGACCACCAGCTGGCCGATGACTGGAAACTGCACGTCGGCTACAGCTTCAACCGCGAGACCTACGATGCC AGCCAAGTTCGCGTGACCGGCGTGAACGAAGCCAATGGCACCCTCAAACGCAGCATCGATGGCACCCACAACGCCATGAGCCGCGACCAGTTCGTCACGG TCAGCCTCAACGGCAATGTCGAACTGGCGGGCATGCAGCATGACCTGTTGCTCGGTGCCGACCACGAGGACCGCAAGATCTTTCGCGGCGACCTGATTCG CCAGAGCAGCCAGTCGACCTTCAGCTACCTCAACCCAGTCTATGGCCAGGAAGTGGAGGGCAGCACCGTACGGGCCAGCGACAGCGACCAGACCGACAAG CTGCGTACCGATGCGCTGTTCTTCCAGGACGCGCTGCACCTGGACGACCATTGGATCCTGGTGGCCGGCGCGCGTTTCCAGCAGTACGACCAGTACGCCG GACGCGGTCGCCCGTTCAAGGCCAACACCGACACCAGCGGCCAGGCCTGGGTGCCGCATGCAGGCATCGTGTACAAAGTGGACGAGCAATTGTCGTTCTA CGGCAGCTACAGCGAGTCGTTCAAGCCTAACTCGAGCATTGCCCCGTTGACCGGCGGGCTGGTACTGGACTCGTCCATTGCGCCGGAGGAGGGCAAGTCC TGGGAGATTGGCGCCAAGCTCGATGTGCCTGGCAAGCTCACCGGTACCCTGGCGCTGTTCGACATCACCAAGCGCAACGTGCTGGTGGCCAACTTCGATA CCAGCAGTGGCGAAACCGTGTACAGCAACGCCGGCGAAGTCGGTTCGCGAGGCGTCGAACTCGATCTCACCGGCCAGTTGAGCGAGCGCTGGAGCCTGAT CGGCAGCTATGCCTACACCGATGCAGAAGTCACCAAGGACCCGGAGCTCAAGGGCAATCGCCTGCAGAACGTGGCCAAGCACAGCGGCTCGTTGTCGGCG GTGTACGACTTCGGCAGTCTGTTCGGCGGCGACAACCTGCGCCTGGGGACAGGAGTGCGTTATGTGGGGGAGCGGGCAGGCAACGCGACCAACACCTTCG ACTTGCCGTCCTACACCGTGGCCGATGCGTTCGCCAGTTACGAAACCAAGCTGGACGAGCACAAGGTACGCCTTCAGTTGAACGTGAAGAACCTGTTCGA CAAGGTGTACTACAGCTCGGCCGTGAATCAGTACTTTGTCGCGATAGGCGATGCGCGGCAGGTGAGCTTGTCCAGCACGCTTGAGTTCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GAATGTGGGGCTGCAGTGCGGCCCCGATTTCACGTGTCGAAAGCCAAGCGGTATTCGCCGGGTGTTGCACCGAACGCCTGCTTGAACCGATTACTGAAAT GGCTGGCACTGGCAAAACCGCACGACAAGGCAATCTCCCCGAGCGCCATCTCGCCCCGCCGCAACAGCTGGCAAGCCCGGTTCAGGCGCCGGGCCAGCAG GTACTGGTGCGGCGGTAGCCCGAAGCTGGTGCGGAACATGCGTGCAAAGTGATATTCGGAAAGGTTGCAGTACAGCGCCAGCTCGCCCAGGGTAATCGGC TGGTCCAGATGCGCTTCGATGTAGTCGGCCAGTTGCCGGCGCGCACTGGGCGCCAGCCCACCTTTCAAGCGCAACCCTTCGCGCAGGCCAACCTGACCGA GCACTGCATGGTCGACGATCTCATGGGCCAGGCTGCTGGCCAGCAGTCGTTCGCTGGGTTCGTCCCAGTTCAGGGTGATCAACTGGCGAAAGCGCCCGGC
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| Amino Acid Sequence |
>TonB-dependent receptor
MKFTPRCIPLCFGLAALGALPVAPLVQAAEQVQLYAFAQPSQPLAQAINAFSRATGQSVVYTLELPVIQAPALNGSFSAEQALQQLLGNSGLTWRRVDAR TLTLEPMDTSGALNLQATTVTSQMDTHSYQPPAVASIMRGQGPTQDIPQAINVVPAQVIRDQAPRNLDDALTNVSGITQGNNFGGTADTVMKRGFGDNRD GSIMRDGMPIVQGRSLNASTERIEVLKGPASLLYGIQDPGGVINVVSKRPQLEQYNALTVRGSTYGSGKNGSGGGFDSTGALGDSQFAYRLIVDHEDEDY WRNYGVHRESLVAPSLAWLGEDTQVVLAYEHREFLYPFDRGTAFGSDGHPLNIPATRRLDEPFNDMQGRSDLYRLEVDHQLADDWKLHVGYSFNRETYDA SQVRVTGVNEANGTLKRSIDGTHNAMSRDQFVTVSLNGNVELAGMQHDLLLGADHEDRKIFRGDLIRQSSQSTFSYLNPVYGQEVEGSTVRASDSDQTDK LRTDALFFQDALHLDDHWILVAGARFQQYDQYAGRGRPFKANTDTSGQAWVPHAGIVYKVDEQLSFYGSYSESFKPNSSIAPLTGGLVLDSSIAPEEGKS WEIGAKLDVPGKLTGTLALFDITKRNVLVANFDTSSGETVYSNAGEVGSRGVELDLTGQLSERWSLIGSYAYTDAEVTKDPELKGNRLQNVAKHSGSLSA VYDFGSLFGGDNLRLGTGVRYVGERAGNATNTFDLPSYTVADAFASYETKLDEHKVRLQLNVKNLFDKVYYSSAVNQYFVAIGDARQVSLSSTLEF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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