Pseudomonas taiwanensis DSM 21245, H620_RS0122120
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0015343 | siderophore transmembrane transporter activity |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Cellular Component | GO:0009279 | cell outer membrane |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0015891 | siderophore transport |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0038023 | signaling receptor activity |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Cellular Component | GO:0019867 | outer membrane |
Inferred from Sequence Model
Term mapped from: InterPro:SM00965
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56935 | Porins | - | - | 139 | 796 | 4.12E-122 |
| CDD | cd01347 | ligand_gated_channel | - | - | 151 | 796 | 1.07082E-93 |
| Gene3D | G3DSA:2.170.130.10 | - | IPR037066 | TonB-dependent receptor, plug domain superfamily | 131 | 252 | 1.3E-26 |
| Gene3D | G3DSA:3.55.50.30 | - | - | - | 27 | 126 | 1.3E-19 |
| Pfam | PF07660 | Secretin and TonB N terminus short domain | IPR011662 | Secretin/TonB, short N-terminal domain | 65 | 106 | 4.3E-7 |
| FunFam | G3DSA:2.40.170.20:FF:000005 | TonB-dependent siderophore receptor | - | - | 253 | 796 | 0.0 |
| FunFam | G3DSA:2.170.130.10:FF:000001 | Catecholate siderophore TonB-dependent receptor | - | - | 127 | 252 | 3.2E-35 |
| Pfam | PF07715 | TonB-dependent Receptor Plug Domain | IPR012910 | TonB-dependent receptor, plug domain | 144 | 242 | 4.1E-18 |
| Gene3D | G3DSA:2.40.170.20 | - | IPR036942 | TonB-dependent receptor-like, beta-barrel domain superfamily | 262 | 796 | 5.6E-113 |
| PANTHER | PTHR32552 | FERRICHROME IRON RECEPTOR-RELATED | IPR039426 | TonB-dependent receptor-like | 115 | 796 | 0.0 |
| NCBIfam | TIGR01783 | JCVI: TonB-dependent siderophore receptor | IPR010105 | TonB-dependent siderophore receptor | 146 | 796 | 6.4E-117 |
| Pfam | PF00593 | TonB dependent receptor | IPR000531 | TonB-dependent receptor-like, beta-barrel | 336 | 791 | 3.2E-69 |
| SMART | SM00965 | STN_2 | IPR011662 | Secretin/TonB, short N-terminal domain | 57 | 107 | 1.8E-8 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.