Pseudomonas taiwanensis DSM 21245, H620_RS0120280

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01584
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004673 protein histidine kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00072
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01584
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016772 transferase activity, transferring phosphorus-containing groups
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0016310 phosphorylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1439 1457 1.2E-11
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 865 962 0.5
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 441 574 5.1E-27
Gene3D G3DSA:2.30.30.40 SH3 Domains - - 1553 1613 1.1E-18
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1463 1476 1.2E-11
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 441 538 4.3E-5
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 862 992 2.5E-20
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 577 671 0.069
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 1004 1136 1.0E-29
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 25 137 7.33E-18
SMART SM00260 chew_2 IPR002545 CheW-like domain 1471 1615 2.9E-25
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 1295 1476 1.69E-36
SMART SM01231 H_kinase_dim_2 IPR004105 Histidine kinase CheA-like, homodimeric domain 1156 1293 3.1E-8
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 18 115 4.5E-8
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 718 846 6.4E-11
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 868 963 3.38932E-5
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 1338 1479 2.5E-24
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 440 560 2.09E-24
Gene3D G3DSA:3.40.50.2300 - - - 1646 1765 7.7E-42
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 579 667 6.4E-11
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1005 1103 1.60156E-13
CDD cd17546 REC_hyHK_CKI1_RcsC-like - - 1646 1757 8.52743E-33
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 1646 1762 9.82E-37
Coils Coil Coil - - 1259 1279 -
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 443 529 2.9E-12
PANTHER PTHR43395 SENSOR HISTIDINE KINASE CHEA - - 1126 1755 0.0
SUPERFAMILY SSF50341 CheW-like IPR036061 CheW-like domain superfamily 1478 1611 3.53E-22
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 1293 1478 1.3E-53
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1005 1102 2.2E-9
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 577 698 8.9E-21
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 297 419 5.41E-8
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 1646 1757 4.3E-28
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 865 984 3.09E-20
Coils Coil Coil - - 873 893 -
CDD cd16916 HATPase_CheA-like - - 1301 1476 7.16429E-80
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 1644 1757 4.0E-36
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 717 838 7.85E-14
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1383 1397 1.2E-11
FunFam G3DSA:3.30.565.10:FF:000016 Chemotaxis protein CheA, putative - - 1294 1478 9.6E-63
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 24 137 3.1E-9
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 14 111 0.74
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 1342 1478 4.0E-14
Pfam PF01584 CheW-like domain IPR002545 CheW-like domain 1484 1615 1.5E-21
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 577 663 1.1248E-6
Coils Coil Coil - - 1187 1214 -
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 1005 1123 8.37E-28
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 868 967 1.3E-6
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 578 707 1.2E-16
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1007 1099 8.0E-17
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 441 521 5.15942E-9

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.