Pseudomonas sp. VLB120, PVLB_23890

Gene Feature Overview

Strain	Pseudomonas sp. VLB120 GCF_000494915.1|latest
Locus Tag	PVLB_23890
Name
Replicon	chromosome
Genomic location	5263776 - 5264465 (+ strand)

Cross-References

RefSeq	YP_008765684.1
GI	557225469
Entrez	17499414
INSDC	AGZ37557.1
NCBI Locus Tag	PVLB_23890
UniParc	UPI0003C0A0C4
UniProtKB Acc	U5VL71
UniProtKB ID	U5VL71_9PSED
UniRef100	UniRef100_U5VL71
UniRef50	UniRef50_Q4K830
UniRef90	UniRef90_I7BVZ6

Product

Feature Type	CDS
Coding Frame	1
Product Name	polar amino acid ABC transporter inner membrane subunit
Synonyms
Evidence for Translation
Charge (pH 7)	10.40
Kyte-Doolittle Hydrophobicity Value	0.710
Molecular Weight (kDa)	25.7
Isoelectric Point (pI)	10.18

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 444 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004747 (526 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PVLB_23890 Search term: polar amino acid ABC transporter inner membrane subunit

Human Homologs

References