Pseudomonas sp. VLB120, PVLB_21710

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 728 838 1.33E-23
Gene3D G3DSA:3.30.450.20 PAS domain - - 275 439 1.1E-6
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 720 836 5.5E-17
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 838 1004 4.0E-40
Pfam PF08447 PAS fold IPR013655 PAS fold-3 471 561 2.9E-12
Gene3D G3DSA:3.30.450.20 PAS domain - - 578 717 9.5E-21
SMART SM00091 pas_2 IPR000014 PAS domain 580 646 0.028
SMART SM00267 duf1_3 IPR000160 GGDEF domain 830 1006 2.9E-64
SMART SM00052 duf2_2 IPR001633 EAL domain 1016 1262 3.5E-128
Pfam PF13426 PAS domain IPR000014 PAS domain 728 829 2.2E-16
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 716 1268 0.0
SMART SM00086 pac_2 IPR001610 PAC motif 788 830 9.1E-6
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 841 1002 6.8E-49
SMART SM00091 pas_2 IPR000014 PAS domain 447 517 0.0045
CDD cd00130 PAS IPR000014 PAS domain 467 565 8.1571E-6
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 576 715 1.5E-11
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 843 1012 9.4E-60
CDD cd01949 GGDEF IPR000160 GGDEF domain 842 1004 5.04652E-60
CDD cd01948 EAL IPR001633 EAL domain 1022 1262 7.26576E-116
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 565 706 4.03E-16
Pfam PF13426 PAS domain IPR000014 PAS domain 592 707 3.7E-5
CDD cd00130 PAS IPR000014 PAS domain 725 827 7.99974E-13
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 432 566 3.54E-18
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 444 574 3.3E-11
SMART SM00086 pac_2 IPR001610 PAC motif 394 435 540.0
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 341 442 1.41E-5
CDD cd00130 PAS IPR000014 PAS domain 589 705 2.91822E-5
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 846 1007 3.53E-48
SMART SM00086 pac_2 IPR001610 PAC motif 525 568 0.0024
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 836 1008 4.4E-44
Gene3D G3DSA:3.30.450.20 PAS domain - - 440 566 6.3E-19
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 1021 1269 6.8E-94
Coils Coil Coil - - 1272 1276 -
Gene3D G3DSA:3.30.450.20 PAS domain - - 718 842 3.7E-30
Pfam PF00563 EAL domain IPR001633 EAL domain 1022 1257 9.7E-77
SMART SM00091 pas_2 IPR000014 PAS domain 716 782 4.4E-7
SMART SM00086 pac_2 IPR001610 PAC motif 666 708 0.001
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 1016 1273 2.9E-107
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 1017 1271 5.3E-103

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.