Strain | Pseudomonas sp. VLB120, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
GACCACAGGGTTTTACTCGGTGCAGAGTGAGCGCTGCATTGCTTGGAATGATCCGCTCATCGCTATTGATTGGCCGATAGACGGTGTGCCTGCGCTGTCT GCAAAGGATCAAATTGGTAAGGCCTTGAAGGATGCTGATTTGTTCGAGTGAGGAGGGCGATTGAAGGGGAACTTTTGATGCGTAAGTACGGGAATGCGGT GGTCCGAGCAGCTAGGCGGGCTTAGAGCTCCATGCAGCCTTTGTTGGCCGGTAGCTGTCTTCGCCATCCTTTACTAAGTCTGCAGACATCATTCCGTAAC AACGATGAGGGCTGTTTCCAGGTCTCCTTAGGAAGCATGTAAGCTAGGCGTAGGAAGTTGTACCGCAACAAGTTGTGACGTCTAATCCAGTCACAAATCC CACTGCAATCAAGCTGGTGGTATTGCGCGTGAGTCGCTAGGTTGAAGGGGCAGCGATGGAAACAGCTGCACACCCAATCAACTCAAAGGAGTGACTACTC
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DNA Sequence for Gene |
>PVLB_06680
ATGCGCAATACCGTCCTCAATTACCTGCTACTGCCGTTGTTCGCCGGCCTGTCCTTTTCGTTGAGCGCTGCACCGGCTGAAGTCGGTGCCATGAAAGAGC CTGTGCCGCTGGTAAGCCAGATGGAGGCGCCAGCCGGGCGGCTGGACTTGAACAAGGCCGATGCGGCCACCTTGCAGAAAGCACTCAATGGTATCGGCAA GGCCAAGGCTGACGCCATTGTGGCCTATCGGGAGGCTAATGGGCCTTTCACGTCGGTGGATGAGTTGCTGGAAATCAAAGGGATTGGCAATGCGTTGCTC GAGAGGAACCGGGGCAAGTTAATGGTCGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GCCTGGAGGTAGCGCCGAACGATTGTTGGCGCTGTTCTCTCAGGGCGTGCTCTGCCGGTAATAGGGCCGTTTTGCAGCCCTGTTACCGGCAAGCCGGCGA TAGGGCCTCCAGATAAGCGCCGCTTGCCGCCCGGTCGTGCATCTTTCACCTATCCTGCGCATCCTTGGCATCTGCTTCAGCGTTGCGCTCATGCACTTTC CTAAGCTGCTCCTCCGTCAAAGGCAGCTTCTTCGCCGTATCTCGCAGCAACATCAGCCCACCGACAATCGAGCCGAGGGCTATGATGAGTATCAGCCAGG CATACCAGGGCATCTGTTGTTCTCCTGTTATCATCAATGCAATCGCTTGTACAAATTTTGAGCGATTGCCGTCTCCGTTGGTTCAATTATAGGAGCCGGC CACCGTTGGGCCAATTCTGCTGCCCCATGGCCACCCAAGCCTGTGCCACATCGTTTACAATGCGCGCCGTTTTCGAATTGCCAAGAGACCCAGACCATGT
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Amino Acid Sequence |
>competence protein ComEA
MRNTVLNYLLLPLFAGLSFSLSAAPAEVGAMKEPVPLVSQMEAPAGRLDLNKADAATLQKALNGIGKAKADAIVAYREANGPFTSVDELLEIKGIGNALL ERNRGKLMVE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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