Pseudomonas sp. VLB120, PVLB_04915

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48557
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0019619 3,4-dihydroxybenzoate catabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02426
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psv01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psv01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psv01220 Degradation of aromatic compounds 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psv00362 Benzoate degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00149 Fumarate lyase superfamily signature IPR000362 Fumarate lyase family 230 257 3.5E-26
Gene3D G3DSA:1.20.200.10 Fumarase/aspartase (Central domain) - - 1 361 6.0E-119
NCBIfam TIGR02426 JCVI: 3-carboxy-cis,cis-muconate cycloisomerase IPR012789 3-carboxy-cis,cis-muconate cycloisomerase-like 5 348 0.0
Gene3D G3DSA:1.10.40.30 - - - 362 450 4.3E-29
PRINTS PR00149 Fumarate lyase superfamily signature IPR000362 Fumarate lyase family 145 163 3.5E-26
PRINTS PR00145 Argininosuccinate lyase family signature - - 275 291 2.1E-12
Pfam PF00206 Lyase IPR022761 Fumarate lyase, N-terminal 11 300 1.5E-78
SMART SM00998 ADSL_C_2 IPR019468 Adenylosuccinate lyase C-terminal 363 442 6.6E-26
PRINTS PR00145 Argininosuccinate lyase family signature - - 230 254 2.1E-12
FunFam G3DSA:1.20.200.10:FF:000014 3-carboxy-cis,cis-muconate cycloisomerase - - 1 360 0.0
PANTHER PTHR43172 ADENYLOSUCCINATE LYASE - - 5 446 5.5E-121
PRINTS PR00149 Fumarate lyase superfamily signature IPR000362 Fumarate lyase family 275 291 3.5E-26
FunFam G3DSA:1.10.40.30:FF:000007 Adenylosuccinate lyase - - 363 444 8.6E-24
PRINTS PR00145 Argininosuccinate lyase family signature - - 99 121 2.1E-12
PRINTS PR00145 Argininosuccinate lyase family signature - - 140 160 2.1E-12
PRINTS PR00149 Fumarate lyase superfamily signature IPR000362 Fumarate lyase family 100 118 3.5E-26
CDD cd01597 pCLME - - 5 444 0.0
SUPERFAMILY SSF48557 L-aspartase-like IPR008948 L-Aspartase-like 5 447 9.42E-128
Pfam PF10397 Adenylosuccinate lyase C-terminus IPR019468 Adenylosuccinate lyase C-terminal 364 441 1.1E-17

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.