Pseudomonas sp. VLB120, PVLB_04835 (sbcB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. VLB120, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCCGCGAGTGTTGAGCTAACCTGTTAATTGGATGTAACAACCACTCGCCAGTCTCTTGCATTCCTGGCATCGGGTACGGACTGCAATAGCCATCATGTAC AACCAACGCCATATCGAACGCCATCAGCCGCCTTGTGTGCTCAAGGTCTACAACCGCTTCACCGAGCAGCAGATCGGCTTTCTGGGTAATGCCTCGGAAG ATGGCTTGATGTTGATCAGCCAGCTGCCGGTGCTGGTCGGCCCGGATTTCGAGTTGCAGCTGCGCCTGCCACTGGCCGGTGGCGGCTTGCAGTTCATCAA CGTGACAGCCAGCTGCCTGTGGTGCCGTGAGGACCAGACCCCCGGCCACTACGATTCTGGTTTCATGCTCTTGCAAGCCCCCCGCGAGTACGACGATTTC GTCCGTTCATTGCGAGACTATTTCAGTTTTAACCCTGCCAACGCTTCCGCCTGAAGCTCGGTCCGCTAGAATCGGGACGACCTCGATACAGGACGACCCC
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| DNA Sequence for Gene |
>PVLB_04835
|sbcB
GTGAGCTCCAGCATTTTCTGGCACGACTACGAAACCACCGGCATCAACCCACGCTGCGACCGACCGCTGCAGGTTGCCGGTGTGCGCACCGACCTCGATC TGAATGAGATCGAAGCGCCTATCAACCTCTATTGCCGCCCCTCCGACGACATCCTGCCGCACCCGGCCGCGTGCCTGGTAACCGGTATCACGCCCGAACA GTTGGCGACCCAGGGCCTATGCGAAGCCGAATTCATGACCCGGGTTCACGAGCAGCTTGCGCGCCCGGGAACCTGTGGCGCGGGCTACAACACCTTGCGT TTCGATGACGAGGTCACGCGTTACAGCCTGTATCGCAACTTCTTCGACCCCTATGCCCGTGAGTGGCAGGGCGGTAACAGTCGTTGGGACCTGATCGACG TCGTGCGCACGGCTTACGCGCTACGCCCTGAGGGCATCGTCTGGCCCCAGCAGGAGGGCCGTACCAGCTTGCGCCTGGAGTTGCTCAGCCAGGCCAATGG CATTGTCCATGGGCATGCCCATGAAGCACTTTCCGACGTGCGGGCGACCATTGGGTTGGCCCGTCTGATTCGCCAGAAACAACCTAAGTTGTATGACTGG TTGTTCAACCTTCGCAGTAAGCACAAAGTGCTGGAACAGATTCGCTTGTTGCAGCCGCTGGTGCACATATCAGGACGTTTCTCGGCCGCGCGTCATTATC TGGGCGTGGTGTTGCCACTGGCCTGGCACCCGCGCAATCGCAATGCACTGATTGTGTGCGACCTGCATCAGGAAACCCTACCGTTATTAAGGGAAAGTGC CGAAGTCCTGCGAGCGCGCTTGTACACTCGGCATGAACATTTATCTGAGGGGCAACTACCGGTACCGCTGAAGTTGGTGCAAATCAACCGCTGCCCGGTA GTGGCTCCGCTATCGGTATTGCGCCCTGCAGATCAACAACGCCTTGGGCTGGACATGGCATTGTTGCAATCGCGCGGTGAGGCCTTGGCCACGCAACAGT CGGTTTGGCAAGACAAGCTTGAACACATCTATGGCACGGAAGATTTCACCCCCAGCGAAGACCCTGAACAGCAGTTGTATGACGGTTTCCTGGGAGAGCG TGACCGTCGTCTATGTGAACAAGTGCGTACCCTGGAACCAGCGCAATTAGGGCATGGCCACTGGATGTTCGATGACCCACGAATGCCTGAGTTGCTGTTC CGGTATCGTGCGCGAAACTTCCCCGAGACCTTGAACCCCCAGGAGCGTCAGCGCTGGTTCGCGTTCTGCCAGCAGCGTTTGAGCGACCCTTTGCACGGCG CCCCGAACACGCTGGCGGGCTTCGAGCAGGCCCGGCAGGGGGCTTGGGCCGATGCCGATGAAGCGGGGCGCAAGGTGCTGGACGCCTGGCAGGCCCATGC CGGGCAATTACAGGCACGGTTCGAATTGCACCCGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATGAGCCAACAAAAACGCCGGCATTAAGCCGGCGTTCGTGTTTGCAAAAGCGAGGAAACAGTGCGGACTATCAGTCCAGCAGAGTCGCCCAGCCTTCAAC CACATCACCACCCCACTTGGCTTTCCATTCTTTCAGGGTCTTGTGGTTACCGCCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTTTTGTATTGCTTG ACTTTGCGTGCACGCTTGGTGGTAGTGGTTTTAGCCACGGCGCGCGGGCCTTTGCTCAGTTTCGACTCTGGGTCGAGCAGGGCGATCACGTCGCGCAGCG ACTTGGAGTATTCACCCATCAGTGCGCGCAGTTTGCCTTCGAACTCCAGTTCTTGTTTCAGCTTGTCATCCTGCGACAGGTTGGCCAGGCGGGCCTGAAG TTCCTTGATGGCTTCTTCGGTAGCGCGGTACTCGTTGATCAGGGACATGGAGTGTTCCTTAGTGCGTGTTCAGAAATGTGTGTGCCAATAATAGACAGGC
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| Amino Acid Sequence |
>exonuclease I
MSSSIFWHDYETTGINPRCDRPLQVAGVRTDLDLNEIEAPINLYCRPSDDILPHPAACLVTGITPEQLATQGLCEAEFMTRVHEQLARPGTCGAGYNTLR FDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDVVRTAYALRPEGIVWPQQEGRTSLRLELLSQANGIVHGHAHEALSDVRATIGLARLIRQKQPKLYDW LFNLRSKHKVLEQIRLLQPLVHISGRFSAARHYLGVVLPLAWHPRNRNALIVCDLHQETLPLLRESAEVLRARLYTRHEHLSEGQLPVPLKLVQINRCPV VAPLSVLRPADQQRLGLDMALLQSRGEALATQQSVWQDKLEHIYGTEDFTPSEDPEQQLYDGFLGERDRRLCEQVRTLEPAQLGHGHWMFDDPRMPELLF RYRARNFPETLNPQERQRWFAFCQQRLSDPLHGAPNTLAGFEQARQGAWADADEAGRKVLDAWQAHAGQLQARFELHP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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