Pseudomonas sp. VLB120, PVLB_04835 (sbcB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0004529 exodeoxyribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000977
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008310 single-stranded DNA 3'-5' exodeoxyribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08411
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.30.420.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08411
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psv03430 Mismatch repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:1.20.1280.70:FF:000001 Exodeoxyribonuclease I - - 352 412 2.3E-25
Gene3D G3DSA:3.30.420.10 - IPR036397 Ribonuclease H superfamily 3 194 4.1E-64
Pfam PF00929 Exonuclease IPR013520 Exonuclease, RNase T/DNA polymerase III 7 185 2.9E-21
PIRSF PIRSF000977 Exodeoxyribonuclease_I IPR023607 Exodeoxyribonuclease I 1 474 0.0
Gene3D G3DSA:3.30.1520.20 Exonuclease ExoI, domain 2 IPR038649 Exonuclease I, SH3-like domain superfamily 207 345 1.2E-42
SUPERFAMILY SSF53098 Ribonuclease H-like IPR012337 Ribonuclease H-like superfamily 4 464 2.63E-116
FunFam G3DSA:3.30.420.10:FF:000033 Exodeoxyribonuclease I - - 3 194 3.5E-90
CDD cd06138 ExoI_N - - 6 188 3.25933E-107
Gene3D G3DSA:1.20.1280.70 Exonuclease ExoI, domain 3 - - 352 411 1.0E-24
FunFam G3DSA:3.30.1520.20:FF:000001 Exodeoxyribonuclease I - - 207 345 1.6E-47
Pfam PF08411 Exonuclease C-terminal IPR013620 Exodeoxyribonuclease I, C-terminal 205 467 5.1E-91

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.