Pseudomonas brassicacearum 51MFCVI2.1, PSBVI21_RS0117940
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum 51MFCVI2.1 PsbVI21DRAFT_scaffold_0.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCTGGCTCGAGGGGCAGTTCTCCCGCATGGCGAACTTGGGCGACGTCGGTGCGCAGAGCTTCTATGGGCACATCCTCACGTTTCGCGGCCAAGGGCTGG GTGCCCGTGAAGAAGGCATTCGCCTGCTGCGGCTGGCGGCATTGGCCGGTGATGGCAAGGCCGCCTACCAAGTTGGCGTGATCAGCCTGGCCGGCACAGC CAGCAAGGCGCCGGACCCGGTTGAAGCGGCGCGTTGGTGGACCTTGGCGGCGAAAGCCGGGCATCCGCTGGCCGAAATCAAGCTCAAATCACTTGAAGCT CGCGATATCTAGGGTTATCCACAGGCGACTCGTTGTGCAGGTCAGACGAATTTAGCGAATCGCCCTACGTACTCTGTCTCCTTCCCCTGACTTAATTCCT CTGTCATCCCCGGCAAAGTCTCGCGCTCCCTGAGCGCTGCGAGACGTCTGCCCATGTTCGACCGTTTTTTCCTGCCGGCCCTTGAGCGAGCCCTGTCCTG
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| DNA Sequence for Gene |
>PSBVI21_RS0117940
ATGGATCAGGTGAGCCGAATCGAGCAGGAACTCGACAGCTTCAAAGGCACCCTTTCGGCCTACCGCGAGCAGCTCGAGCGCTGGTACAGCCGAGCAGCGG ACCGGGCCAGTCATGTCGCTGACCTGCCGTCGCTGATGGGCATGGAGCGGCTGATCCGCTTTGGCGACAGCACCACCGCTGTCAGCATCGGTGACGATGA CTTCCTCTCCACGGTCGTCCAGTGCCCCAAGGGCGGGCCGATGACGATCGAGAGCAAGTTCGAGTCGGTGTACGACATCCCGCTGGGCGACATCGCGGTG GATGTGGTGGACGTGGCCAGCGGCGAGGTCACGCCGGTCACCCTGGATGCCCAGGGCCTGGGGACCTTCCTGGGTGAGGCAGGCAAGTCCTATCGGGTTC ATGTCCAGGGCGAGGTGTCCGCCAAGCAAATCGCGAATCTGTTTTCTTCCTACGATGGCCTGACCACCGATCTGACGGACTGGTTGCGCGGTGAGTGGCA GGGTTTCAAGCCGCGATGGGCACAACAATCGCTGTCGACTTCGGCGGCGGCGGTGGGGAACGGGCTGCTCGCCGGTAGTTGGGCGGCGATTGAAAGTGTT TGGGACAGCATCAGCTTACTCTCGGACATTCTTAAGGACCCTGGTCAGTTTGTTGATCGGTTGGGCGAAAGCGCCAAGCAACTGGAGGACCTGGCGGAAA AAACACCGCTGGTGATGGCCAAGCTGCAACTGCTGGCCAGCGACGAAGCGGCGCTGTGCCTGTTGGTGCGCACCGCCAGTCTCTGGTTGGAGATGTTGCC GCCCAGTGAGGTTGCCGGGGAAACGGCCGAAGCCCTGTCGAGGGTGACAGTGCAGTTGTTGATCGACCTGTTGATTGGTGTCGTCCTGACCTTCACCGGT GCGGGTGCCGGTATCGCTTATCTGTCGATGCGCCTGGGGAATGTGGGCGTGCGCCTGCTGGGTGCCATGCAGCGTTTCATCGGGGCGATCTTCGCGGTGG TCAATGGCTTCATGACCTACGTGGACCGCTACAAATCCGTGGCGGCGCGCGGTATCGCGGCCGGGGTGAAAAAGGGCCGGATGCAACTGCGCTGGGATGC GCAGCGCAACACCACGCTGAAAAAACACGAACATCACGACGACGCCCCGGCCCAGTCGAAAAACCCCAACGGCGACAGCGCCGACACTGCGGCCCAGACC CAGACCAGCGGCTGCCCGGTGTCGATGGTCACCGGCGAAGAACTGCTGACCCTCGACGACGGCACCCTCGATGGTCGCTTGCCGTTCGTCTTCACCCGTT TGTACCGCACCAGCGCCGCCGACCTGGACGTCGGCCTCGGGCGCGGTTGGAGCCATGCCCTGGCCCATCGCTTGGAACTCGACGGTGAGCAGGTCACCTG GGTCGACCAGGAAAACCGCCGCACGACCTTTCCGCTGCCCAGCGCCCAGCGTCCGGCGATCCACAACAGCCTGGCCCGCGCAGCGATCTACCTGGGCTCC GAGCCGGACGAACTGATCGTCGCCCAACCCGGCGAAAACGCTCCATTCCTGCACTTTCGCGACGGCCACCTGAGCGCCCTCAGCGACCGCTACGACAACC GCCTGACCATCCTGCGCAACATCCATGGCGACATCAGCCGCCTGGACAACGGCGCCGGGCGCGCCTTGCGCCTGCGTTACGAACAGCGCCACCTGATTGC CGTCGACTACCAGAGCTTCCATCCCGCCATCACCCTCGACGAAGCCTGGCGGACCGAGCAGACGCTGGTGTCCTACCGCTACGACGGACGTTTCCGACTG ATCGAAGCGACCAATGCTGCCGGTGAAAGCGAGCGCTACGACTACGACGACCGGCACGTCATCCTCCAGCGACAACTGGCCGGTGGGGCAAGTTTCTACT GGGAGTGGCAAGGCGTCGGGCCGGCGTCCCGCTGCGTACGGCATTGGGCTTCGTTTGCGCAGATGGACAGCCGCTACACCTGGGGCGAAGACGGCAGCGT CACGGTCCAGCACCTGGATGGCAGCCAGGAGGTGTATGTCCACGACGAGCGGGCGCGGCTGGTGCGCAAGGTCGAGCCCGACGGCGGCGAGCACCTCAAG GCCTACGACGAACAGGGCCGGCTGATTGCTGAGCAGGACCCGTTGGGGGCGGTCAGCGAATACCGCTACGACGAGGTCGGACGGCTGGTGGCGCTGCTTC CCCCGGATGAGGCGCCGACGTACTACGAATACCGCAACGGTTTCCTGCACGTCCGTTCACGCGGCAAGGCCGTGTGGACCTACCGGCGCAATGCCCGCGG CGACGTGATCGTCCTCATCGACCCGGATGGCCGGCGCACGGAATATGCCTACGACGCCCATGGGCAACTGCTGGCGACGTATGCCCCGGACGGTGGTGAA CATCGCTTCACCTGGAGTCGCCTGGGCCAACTGACCGAAGAGATCCTGCCCGACGGCGGTCGCCGGTGTTTTTCCTACGACGCCCTGGGGCGTTTGCTCA GCCGCCAGGACGAACACGGCGCGCTCACGCACTACCAATGGGACGCCGTCGGCCGACTGCTGCAGGTGACCTTGCCCAACGGTGCCACCCGAACCTGGCG CTACAACGCCTACGGCAAGGTCACCGCCGAGTGCGATGAACAAGGGCGGGTCACCCGCTACGAATACGCCGACGACCTGCACCTGGTCAGCCGCCGCCTG AACCCCGACGGCAGCGAGCTGAAGTACCGCTACGACTCGGCGCGGCTGTTGCTGACCGAAATCGAAAACGAATCCGGCGAAAAATATCAGCTGGACTACA CGCCCAACGGCTTGATCCGACAGCAAGTCGGCTTCGACGGCCAACGCACTGCCTACGCCTACGGCCTCAACGGCCACCTGCTGGAAAAAACCGAGCACGG CGAGGACGGTTCACAACGGCTCACCCAGTACCAGCGCGACGCGACCGGGCGGCTGCGGGTCAAGACCTTGCCCGACGGCCAGGCCATCGAATACCGCTAC GACGAGCTGGGCCGATTGGTCCACGTCAACGACGGCAGCGATCATCCGTTGGCCTTCGAATACGACTTCCAGGACCGCTTGGTCTGCGAGCACCAGGGCT GGGGCACCCTGCGTTATCGCTACGACGCTTGCGGGCGCCTCAACCACCTGCGCCTGCCGGACGACAGCCAGCTCGACTACCACCATGCCCCGGGTGGCGC ACTGACCGCCATCGACCTCAACGGCTCGCGCCTGACCGAACACCGCTTTGACGGCGGGCGCGAACGGCAACGCCAGCAAGGCCGGCTGCTCAGTGACTAC GACTACGATGAACAGGGCCGTCTCAAGGCCCAGACCGTGTGGCAGAGTCGACAGCAGCAACTGTTCTGGCGCGATTATGCCTACAGCGCCAAGGGCAACC TGCAAACCCTTTCCGACAACCGAAACCGCCGCAGCTACCAGTACGACCCGCTGGATCGCCTGACCCGCATCGACTTTTCCCACAGCGAGCCGCCGGAACA CTTCTGCCACGACCCGGCCGGCAACCTGCTGATGCAGGACCGCCCCGGCCCGACCACCCTCAAGGGCAACCGCCTGCTGAAGGAGGGCGACCGCCACTAC GACTACGACGCCTTCGGCAACCTGATCCGCGAACGCCGCGGCCAGGCCCTGGTCAGCGCCTACCGCTACGACAGCCAGCACCGCCTGATCGGCGTCACCA CGGCGGACGGGCGCGAAACGTCCTACCGCTACGACGCCTTTGGCCGACGCATCAGCAAAACGGTGGACGGGCTGACCACGGAGTTTTTCTGGCAGGGCGA CCAGGTCGTCGCCGAAAACAGCCCGCGCCACCACCGCAGCTATGTCTACGAACCCGGCACCTACCGCCCGCTGGCGATGCTCGACGGCGAAGGCCCGGAA AAAGCCACGCCGTTCTATTACCACCTCGACCACCTGGGCACGCCCCAGGAACTGACCAGCTTCAGCGGCCAGATCGTCTGGTCGGCGCGCTACAACGGCT ACGGCCAACTCACTGAACTCCAGCACGGCGGCGGCGAACAGCTGGAACAACCGCTGCGCTTCCAGGGCCAATACTTCGACCCCGAAAGCGGCCTGCACTA CAACCGCCACCGCTACTACAATCCCGAGACCGGCCGCTATCTGACGCCTGATCCGAGCAAGTTGGCGGGTGGGCTCAATGGGTACCGGTACACCCTGAAC CCGACGGGGTGGGTGGATCCGTTGGGGTTGGAAGGTTGCCCTGGTGACGGATGTAAAAAGCCCGCCGTCGGTGAGCAAGACCCGACGGCCAAGCTTGGGG TGGATGAGGGTGAACCGGCGCTGCCGATGACGGCGGAGCAGCGGCGGGCGCGGATTGATGAGTTGGCGGAGGCGAATGCCTACCGGCGCTTGGATGAAAT GGAACGATCGATTGAGGGCGCGCATTTCTTGCAGAAACATGGTGCTCAGACTACGGCCTATTCTCAGTTAGAGCGCGTTAGGACAGGCCGGAACCCGGGC ACTGGGGAAATCGATGTTTATGGAAGCGGAAGTAATGCAGGCCTGCCTGCTATTCCGTCTGCCGCAACTCGTTTTTTTAGTCATCGCGACCAACTCAATG CTATTCATCGAGCGCAGTTGATTTTCAGGCGAGTAGGCATTGTGGCGTCTAAGAAACCAATTGAAATGGGGCGTGTAATTGGTGAAGGTTATAAGCGGGG AAGTTTAGAGTATGGTCAAAGTACGAAGGCGATAGTCATTCTGGATGGGAGTGGTCGACCTAAAACAGCCTATACAGGATTCGGTGAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAAATACATATGACTTGCATGATGTCTGGGGGTTGTTGTTTGTTTTCAGTATTGAAAATACTCACGACGTGGCGCGTGAGGAAATAATAACTTCAAAAAA TGTAAATGATGATGAGGAGTTGGGTCAATTATTTGATTTGTTGATTCGTCCGGAGTTTTTATTTCACAGCCCAAAGGAGAAAATTTTGTTGATTAATACT CTCAGCTATTTCCTAGAAAACGGTGATAGCTTTGATAGGGTTTTTTTGAATCTGGATACATATTTTGATGACGATGTTAATGATCAGCGCCAATTTATGC GAGTCCTGTTGGCTTCTTTGATGAGATATCAAGCCGAGAGTTGATCGTTCCTACGATCTGCGGGGGAATGCATCTCGCGATGCTCTGCGTCACCCTTCCA GAAACGGAGCGCGGAGCGTCCCTGGTGGCGTTCCCACGCAGGAGCGAGGGAACAATCGAATAGGAAACAATGAAATGATCGATCCAAGCACCGGCCAGCT
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| Amino Acid Sequence |
>type IV secretion protein Rhs
MDQVSRIEQELDSFKGTLSAYREQLERWYSRAADRASHVADLPSLMGMERLIRFGDSTTAVSIGDDDFLSTVVQCPKGGPMTIESKFESVYDIPLGDIAV DVVDVASGEVTPVTLDAQGLGTFLGEAGKSYRVHVQGEVSAKQIANLFSSYDGLTTDLTDWLRGEWQGFKPRWAQQSLSTSAAAVGNGLLAGSWAAIESV WDSISLLSDILKDPGQFVDRLGESAKQLEDLAEKTPLVMAKLQLLASDEAALCLLVRTASLWLEMLPPSEVAGETAEALSRVTVQLLIDLLIGVVLTFTG AGAGIAYLSMRLGNVGVRLLGAMQRFIGAIFAVVNGFMTYVDRYKSVAARGIAAGVKKGRMQLRWDAQRNTTLKKHEHHDDAPAQSKNPNGDSADTAAQT QTSGCPVSMVTGEELLTLDDGTLDGRLPFVFTRLYRTSAADLDVGLGRGWSHALAHRLELDGEQVTWVDQENRRTTFPLPSAQRPAIHNSLARAAIYLGS EPDELIVAQPGENAPFLHFRDGHLSALSDRYDNRLTILRNIHGDISRLDNGAGRALRLRYEQRHLIAVDYQSFHPAITLDEAWRTEQTLVSYRYDGRFRL IEATNAAGESERYDYDDRHVILQRQLAGGASFYWEWQGVGPASRCVRHWASFAQMDSRYTWGEDGSVTVQHLDGSQEVYVHDERARLVRKVEPDGGEHLK AYDEQGRLIAEQDPLGAVSEYRYDEVGRLVALLPPDEAPTYYEYRNGFLHVRSRGKAVWTYRRNARGDVIVLIDPDGRRTEYAYDAHGQLLATYAPDGGE HRFTWSRLGQLTEEILPDGGRRCFSYDALGRLLSRQDEHGALTHYQWDAVGRLLQVTLPNGATRTWRYNAYGKVTAECDEQGRVTRYEYADDLHLVSRRL NPDGSELKYRYDSARLLLTEIENESGEKYQLDYTPNGLIRQQVGFDGQRTAYAYGLNGHLLEKTEHGEDGSQRLTQYQRDATGRLRVKTLPDGQAIEYRY DELGRLVHVNDGSDHPLAFEYDFQDRLVCEHQGWGTLRYRYDACGRLNHLRLPDDSQLDYHHAPGGALTAIDLNGSRLTEHRFDGGRERQRQQGRLLSDY DYDEQGRLKAQTVWQSRQQQLFWRDYAYSAKGNLQTLSDNRNRRSYQYDPLDRLTRIDFSHSEPPEHFCHDPAGNLLMQDRPGPTTLKGNRLLKEGDRHY DYDAFGNLIRERRGQALVSAYRYDSQHRLIGVTTADGRETSYRYDAFGRRISKTVDGLTTEFFWQGDQVVAENSPRHHRSYVYEPGTYRPLAMLDGEGPE KATPFYYHLDHLGTPQELTSFSGQIVWSARYNGYGQLTELQHGGGEQLEQPLRFQGQYFDPESGLHYNRHRYYNPETGRYLTPDPSKLAGGLNGYRYTLN PTGWVDPLGLEGCPGDGCKKPAVGEQDPTAKLGVDEGEPALPMTAEQRRARIDELAEANAYRRLDEMERSIEGAHFLQKHGAQTTAYSQLERVRTGRNPG TGEIDVYGSGSNAGLPAIPSAATRFFSHRDQLNAIHRAQLIFRRVGIVASKKPIEMGRVIGEGYKRGSLEYGQSTKAIVILDGSGRPKTAYTGFGE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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