Pseudomonas brassicacearum 51MFCVI2.1, PSBVI21_RS0117940
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| PRINTS | PR00394 | RHS protein signature | IPR001826 | RHS protein | 1298 | 1318 | 2.9E-12 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 702 | 731 | 6.0E-5 |
| Coils | Coil | Coil | - | - | 4 | 24 | - |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 805 | 845 | 0.0014 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 1223 | 1254 | 6.1E-8 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 702 | 733 | 3.8E-6 |
| PANTHER | PTHR32305 | - | - | - | 592 | 1411 | 8.0E-36 |
| Gene3D | G3DSA:2.180.10.10 | - | - | - | 917 | 1409 | 1.1E-93 |
| PRINTS | PR00394 | RHS protein signature | IPR001826 | RHS protein | 1355 | 1375 | 2.9E-12 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 764 | 804 | 2.0E-6 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 1223 | 1255 | 6.3E-9 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 681 | 718 | 0.0024 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 847 | 876 | 1.9E-6 |
| PRINTS | PR00394 | RHS protein signature | IPR001826 | RHS protein | 1378 | 1397 | 2.9E-12 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 373 | 403 | - |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 980 | 1012 | 7.7E-7 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 1000 | 1031 | 5.0E-4 |
| NCBIfam | TIGR03696 | JCVI: RHS repeat-associated core domain | IPR022385 | Rhs repeat-associated core | 1331 | 1410 | 8.8E-25 |
| SUPERFAMILY | SSF69304 | Tricorn protease N-terminal domain | - | - | 677 | 939 | 8.37E-7 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 826 | 863 | 3.4E-8 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 847 | 888 | 8.1E-8 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 868 | 905 | 8.0E-5 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 764 | 799 | 9.7E-6 |
| Pfam | PF20148 | Domain of unknown function (DUF6531) | IPR045351 | Domain of unknown function DUF6531 | 404 | 477 | 4.2E-19 |
| Pfam | PF03527 | RHS protein | IPR001826 | RHS protein | 1306 | 1339 | 2.1E-14 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 784 | 820 | 8.9E-5 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 386 | 403 | - |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.