Pseudomonas chlororaphis O6, PchlO6_5742 (soxB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis O6 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCCAGGGCGGCCCGCTGATGCACGTGATCGCCGGCAAGGCGGTGTGCTTCAAGGAAGCGCTGGAGCCTGGCTTCAAGGCCTACCAGCAGCAAGTGATCG AGAACGCCCAGGCCATGGCCGGCGTATTTATCAAACGCGGCTACGATGTAGTGTCCGGCGGCACCGACAACCACCTGTTCCTGGTCAGCCTGATCCGTCA GGGCCTCACCGGCAAGGACGCGGACGCCGCCCTGGGGCGCGCTCACATCACCGTGAACAAGAACGCTGTCCCGAACGATCCACAGTCGCCGTTCGTGACC TCCGGCCTGCGTATCGGCACCCCGGCGGTGACCACCCGCGGCTTCAAGGTTACCCAGTGCGTGGAGCTGGCCGGCTGGATCTGCGACATCCTCGACCACC TCGGCGACGCCGATGTCGAGGCCAATGTCGCTCGTCAGGTATCGGCCCTGTGCGCGGACTTCCCGGTTTATCGCTGAGTGCGGTTTTGGAGTAAATGACT
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| DNA Sequence for Gene |
>PchlO6_5742
|soxB
ATGCAACGCTACTCGGGCTTCGGCCTCTTCAAGCACTCCCTCAGCCACCATGAAAACTGGCAGCGCATGTGGCGCACGCCGACCCCGAAAAAGGTCTACG ACGTGGTCATCGTCGGCGGTGGCGGGCATGGCCTGGCGACCGCCTACTACCTGGCCAAGGAGCACGGCATCACCAACGTCGCCGTGGTCGAGAAAGGCTG GCTGGGCGGCGGTAATACCGCGCGCAACACCACCATCGTGCGTTCCAACTACCTGTGGGACGAGTCGGCGCACCTGTACGAACACGCGATGAAACTGTGG GAAGGCCTGTCCCAGGACCTCAACTACAACGTGATGTTCTCCCAGCGCGGCGTCTACAACCTGTGCCACACCCTGCAGGACATCCGCGATTCCGAGCGTC GGGTCAGCGCCAACCGCCTCAACGGCGTGGACGGCGAGCTGCTCAACGCCAAGCAGGTGGCGGACGAGATTCCGTACCTGGACTGCTCCAAGAACACCCG CTACCCGGTGATGGGCGCCACCGTCCAGCGCCGTGGCGGCGTGGCCCGCCACGACGCCGTGGCCTGGGGCTTCGCCCGTGCCGCCGACGCCCTGGGCGTG GACCTGATCCAGCAGACCGAAGTGATCGGCTTCCGCAAGGAAAACGGTGTGTGCATCGGCGTGGAAACCAACAAGGGCTTCATCGGCGCCAAGCGCGTCG GCGTGGTCACCGCCGGTAACTCCGGGCACATGGCCAAGCTCGCCGGTTTCCGCCTGCCGATCGAATCGCACCCGCTGCAAGCACTGGTGTCCGAGCCGAT CAAACCGATCATCGACAGCGTGATCATGTCCAACGCGGTGCACGGCTACATCAGCCAGTCCGACAAGGGCGACCTGGTGATCGGCGCCGGTATCGACGGC TGGGTCGGCTACGGCCAGCGCGGTTCGTACCCGGTGATCGAACACACCATCCAGGCCATCGTCGAGATGTTCCCGATCCTTTCGCGGGTGCGCATGAACC GCCAATGGGGCGGCATCGTCGACACCACCCCGGACGCCTGCCCGATCATCTCCAAGACTCCGGTGCCGAACATGTTCTTCAACTGCGGTTGGGGTACCGG CGGCTTCAAGGCAACCCCGGGTTCGGGCAACGTATTCGCCGCGAGTCTGGCCAAGGGTGAAATGCACCCGCTGGCCGCACCTTTCTCCATCGACCGTTTC CACAACGGTGCGCTGATCGACGAACACGGCGCTGCAGCTGTCGCCCACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CAAAGGCCTCATGAAAACTACTGCGCTCGGCAATACGGCGTTAAAAACAGGCTCGAAATGCTCACTTAGTAAACTAAGCTCCGCTTTCTCCCCTGTTTTT GCCTTGTCTTGCCTTCGCTCGCTACGTTTTCAAGAGGCTTGATAGGAGAAATCCCTATGTTGCACATCTTCTGTCCTCACTGCGGCGAACTGCGCTCCGA AGAGGAATTCCATTCGTCCGGCCAGGCGCATATCCCGCGTCCGCTGGATCCGAACAACTGCACCGACGAGGAGTGGGGCAACTACATGTTCTTCCGCGAT AACCCTCGCGGTCTGCACCACGAGCTGTGGATCCACGCCGCCGGCTGCCGTCAGTACTTCAACGCCACCCGCGACACCGTGACCTACGAGATTCTCGAAA CCTACAAGATCGGTACCAAGCCGCAATTCACCGACAAGACCGATAGCCCGAAAGCGGCCACGCAGGCTCTGGGAGAGAAGGTATGAGCCAGTCCAATCGC
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| Amino Acid Sequence |
>sarcosine oxidase subunit beta
MQRYSGFGLFKHSLSHHENWQRMWRTPTPKKVYDVVIVGGGGHGLATAYYLAKEHGITNVAVVEKGWLGGGNTARNTTIVRSNYLWDESAHLYEHAMKLW EGLSQDLNYNVMFSQRGVYNLCHTLQDIRDSERRVSANRLNGVDGELLNAKQVADEIPYLDCSKNTRYPVMGATVQRRGGVARHDAVAWGFARAADALGV DLIQQTEVIGFRKENGVCIGVETNKGFIGAKRVGVVTAGNSGHMAKLAGFRLPIESHPLQALVSEPIKPIIDSVIMSNAVHGYISQSDKGDLVIGAGIDG WVGYGQRGSYPVIEHTIQAIVEMFPILSRVRMNRQWGGIVDTTPDACPIISKTPVPNMFFNCGWGTGGFKATPGSGNVFAASLAKGEMHPLAAPFSIDRF HNGALIDEHGAAAVAH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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