Pseudomonas sp. CFII64, CFII64_06655

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. CFII64 soap_scaffs_II64_half.Contig8, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TTGCTTGCTCGACCACCAGGCGCAGACGCGGGTTCATGTCCGGATCAGCGCCGGCGCGTGCAGCAATCATGATTTCCTTGGACAGCTTGCCAAAAATACG ACCCTTGGCATTGGATGCTGCTTCTTTATGCTTGACCTTCCACTGTGCGCCCATGCTTGCTCTCTTGATCCGATTGCGCCCTGCCCATCACAGCCGCTGT CGCTGAGAAACACCGACGCTGGCTGGGGCAAAGCGCTGAAAAATTGGCTGACCGAATGAAACGCGTCGCGACTGATGAGCGACGCCCGGCGCATTTTATA CGCGATGGCGCCAGATGAAACCCCTGCTGTCGCGCCATTGATCGCAGTCAAGCCGACAATGCAGCTGAAACACCTTGAAGCCAATCACCGATATTACCCT TTAGCTTGTAGTCCCTTTCCGAAAAAAGCCCAAGCGATGCCCATTGCCCTTGGCATTTCGTACCCTCTGCACCCTGAATTTCAAGCTGGGAGCGCTGTGT
DNA Sequence for Gene
>CFII64_06655
ATGTTCGAAGACAAGCAAATGCCGATAACGCTGAAGCTCACGGGCAGCCCGATGGACCTGCAAGTCCTCAGCTTTACTGGCCACGACGCGCTGAACGAGC CCTATCGCTTTGACGTTGATCTGGTCAGCCGTAACCCGCATCTGGATATGCCAAGTCTGGCAGGCAGCGCCGCCTGGCTGGCCTTTGGTGTTGAACATGC GGGGATTCATGGCCTGATCGACAGCGCCAGACAACTCTATGCCGGAACGTGCCTGAGCCTGTACCGAATGACCCTGGTGCCAAGTCTGCTCAAGCTGGAA CAAAGCCGCCAACGCCGCGTGTTCACGGGTTTGAGCGTCCCGCAGTTGATCACCCGATTGCTGGAAAACCATGGTTTGAACGAAGACGGCTACCGTTTCG AGGGACCGGTTGGCGTATACCCGCCTCGCGACTGGTGCGTGCAGTACGACGAAACCGACCTGCACCTGCTGCAGCGGCTCTGCGAAGAGGAAGGCATTCA TTTCCGGTTTGAGCACAGCCCCACCGGGCACCAGCTTGTATTCGCCGATGACCCGGCCAGTTTCCCCGAACGCCAGGGCGCCATACGCTTGCAGCACAAC GAAGACACCCACAACCAGCCGGTTATCGGCTATCTGGGCGAACGCCTGACCCTCCATGCCGCAACGGGCATCCATGACCCGGTATGGCGCGATTGCAGCA CTCTCAGCGCCAACACCCCAACCAATGCGCAACCAGATACGCAAAGTGCCAATAACGCATCTTTCGATCAACAAACCGATCCCCCAAAACCCGGCGACGA GGAAGCCCACCATCGACAGACACGCGCTCGTACGCTGGAGCGCCTGCGTTGCGAGCGACGTCATATCCATGGGTGGAGCAGCGATTGCGCACTGACCAGT GGCCAGATCATTCAGGTTATGGAGCATCCCGTCCCGCTGTTCAACGATCAATGGCTGCTGGTCAAGGTCCGCCATTGGGCAAAGCAGCCACAGGTCCTGG AGGGCTGCGACCCTCACGACATGGCCGCAATTCTCGGCGCGGCTGTTGGCGCAGCGGACGAAGAATCAGCGTCGTGGATCGATCAACTGTCGAGGCTGCA TGAGTTTGAGACATTCGATCACGGCTATCGCACCGGCTATTGCGTGCTGCCTTGGGCCATGCCATTTCGCCCGTCCTGCACCCATCGCAAACCCGGCATA CGCGGTCATCAGCAGGTGACATTGATGGCTGATGTGGCCGGGTTCATCAGAACCCATGCTGCATGGCGAGTCCCGGTACGTTACGACTGGCAGAATGCGC CATCCTCACCGGACGAACACACCGCCTGGGCCCTGGCAGACCTCCCGGATCTCGCCGATGTCTCGGTCAACGCACTGACCGCTGGAGATCGGTTGCTGGT GCGGCATTTCGACAACGATCCTGAGCGACCGGTTATTTGCGGCATGCTGGAACGTCGAACGGCATCTGAGGTTGCCGAATGCCCAGAAAAAACAATTCGT TTGAATGGCTCCATTCTCAAAAACCTGCATGAGAATATTCATTTGAATAATGTGAACGATTTATATTTCGAAGCCAGGGAAGACTTACGTTTAAGCACTG CCAAGGCGAGTTTCGAGCTGAGTAGTGCTGGAATCACCATCACTGGCCCGCGCACGCTCACCTTGCAAGCCTGTACGTTACCGACAATGGCCCCCGCCGG GCCGCCAACCACGCTGCGCTGGGAAGACGATCTGCGCTTGACCGAACATCCCGGCTTGCAAGGCGCGCCGCTGGCAAACCGAATCTGGTACATCGTGTTC ATGGAGACCCCAGGGCTGGCGCACTTGCCGCGCCTGGAACCCCGGCATTTTCTCTATGAGGGCAGAACCGACGAGCGCGGCTATCTCGGGCTGAGCTGTG CCCAGATGCGCGAGCTTGCCGCCCGCTACCGCAGAAGCCCGAAGCACCTGTGCCTGGTGCATCCCGACGACTGCTTCACGTTGCAGGACTACTTTGCGCG GAACTGGAACGAGCAGCAGCTACGCGCATTCATGGAGCTGGACTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CAAGCCCCCGGCTTCGCGTTAGCGTCCGTTGAATTGCGGCTCACGCTTCTCGATAAAGGCTGCCATGCCTTCCTTCTGATCCTCGGTAGCGAATGCCGCG TGGAACACTCGGCGCTCGAAACGAATGCCTTCGGCGAGGCTCACTTCAAACGCCCGATTGACGCTTTCCTTGACCATCATCGCTATCGGCAAGGATTTTT CGGCGATTGAGTTCGCCACCTTGAGGGCCTCGTCCAACAACTGCCCGGCAGGCACGATGCGCGCCACAAGTCCGGCTCGCTCGGCCTCCTCGGCATCGAT CAGGCGTCCGGTCAGGCACATTTCCAAGGCCTTGGCCTTGCCGACCGCACGGGTCAGGCGCTGGGTGCCGCCCATGCCCGGCAATACGCCGAGTTTGATT TCCGGCTGACCAAACCGCGCGTTGTCTGCGGCCAGGATGAAATCGCACATCAATGCCAGCTCGCAGCCCCCGCCCAAGGCAAAGCCTGCCACTGCGGCAA
Amino Acid Sequence
>Rhs element Vgr protein
MFEDKQMPITLKLTGSPMDLQVLSFTGHDALNEPYRFDVDLVSRNPHLDMPSLAGSAAWLAFGVEHAGIHGLIDSARQLYAGTCLSLYRMTLVPSLLKLE QSRQRRVFTGLSVPQLITRLLENHGLNEDGYRFEGPVGVYPPRDWCVQYDETDLHLLQRLCEEEGIHFRFEHSPTGHQLVFADDPASFPERQGAIRLQHN EDTHNQPVIGYLGERLTLHAATGIHDPVWRDCSTLSANTPTNAQPDTQSANNASFDQQTDPPKPGDEEAHHRQTRARTLERLRCERRHIHGWSSDCALTS GQIIQVMEHPVPLFNDQWLLVKVRHWAKQPQVLEGCDPHDMAAILGAAVGAADEESASWIDQLSRLHEFETFDHGYRTGYCVLPWAMPFRPSCTHRKPGI RGHQQVTLMADVAGFIRTHAAWRVPVRYDWQNAPSSPDEHTAWALADLPDLADVSVNALTAGDRLLVRHFDNDPERPVICGMLERRTASEVAECPEKTIR LNGSILKNLHENIHLNNVNDLYFEAREDLRLSTAKASFELSSAGITITGPRTLTLQACTLPTMAPAGPPTTLRWEDDLRLTEHPGLQGAPLANRIWYIVF METPGLAHLPRLEPRHFLYEGRTDERGYLGLSCAQMRELAARYRRSPKHLCLVHPDDCFTLQDYFARNWNEQQLRAFMELD
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site