Pseudomonas sp. CFII64, CFII64_05560
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CFII64 soap_scaffs_II64_half.Contig8, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCCCGCGCAATTCGAACATCACTGACATCACCGATCCCGCTGGCCGACCATGCACCTCGAAGCCGGCTTCGCCATAGTGGCTGATGCCGAGGATCCGCGA GTCTTCGAAAATACCGGTGTAGAACTCGGCGGCCTGCTGCGCCTGATCATCGAACCACAGGCACGGGCTGATCATTTGTTTTATAGCCATGAATAATCCT CCAGAAAGCGTGACGCCCAACGCCACGTACTTGATTAGTCGATCCGTGATGTCCGGTTTCGACACCACTGCAAACCTGAAATAAAACGTATCAGGAATGA AACAACGCACTTCCGAAATAAGAGACAAACTAAAAAACAACTTACCAATCGTCAGAAACAACCCTCTATAAGCGCTTGATTTAGCCACTCAAGTGGCGAT TCGATAGGTTGCTATTATGCTTGGCTTCTTGCGGGCGAACTCTGGCAGCCACGTTTTCATTACAGGCACAGCAATTCATATACCCAAAGGTAAAGCCATC
|
|
| DNA Sequence for Gene |
>CFII64_05560
ATGAAAGTAATTACTATCAGTTTGATCGCAGTGGCAATTACGGCGGCGGCTATGCAATCAGCGGCGGCGGAAGCATTGGTCAGCGATCAAAACGAAGCCA AAGGTTTCATGGAAGACGCCAAGGCCAATGTGCTGTTGCGCAACTACTACTTCAATCGCGACGGTAAAAATGGCATCGGCGACCGAAGAGATTGGTCGCA GGGCGTATTGGGTAATTTCTCTTCAGGGTTTACCCAAGGCACGGTCGGCTTTGGCGTGGATGCCTACGGCTGGTTCGGTCTGAAACTCGATGGCGGCGCC GGAAGATCGGGCACCGGCAACATTCCGGTAGACAGCGATGGCAGCCCGGAAAGCAACTTCAGCAGTGCCGGTGGCGCACTCAAACTGCGTTTCTCCAAGA CCCTGCTCAAGTGGGGCCAGATGCAGCCAACTGCGCCGGTGTTCGCGGCGGGCGGCACCCGGTTGTTCCCGCAGACGGCCACCGGACTTGCTCTGCAAAG CAGCGAAATAACCGGACTGGATCTTGAGGCTGGCCACTTCACCGCCGCCAACGGCCCGCAACATACTGACTCTGACGGTGAGATTTTCGCGACTTACGCC GGGGTCACCGCCAACAGCGTTGATTATGTCGGCGGCAAGTATGCAATCACTGATGCCCTCTCCGTTTCGCTGTACGGATCGGAGTTCGAAGACATCTGGC GTCAATACTATGCCAATGCCAACTACACACTGGCGCTGGCCAACGATCAATCATTGCTCTTCGACTTCAATATCTATCGCACTAACGACGAAGGCCAGGC CAAGGCTGGCGATATCAGTAACACGACCTGGTCGCTGTCGGGCGCCTATGCATTCCTGGCAGGTCACACTATTACGCTCGCCTATCAACAAGTACACGGC GATGAACCGTTCGACTATGCAGGCTTCGGCGATAACGGACCAGGCTCGGGCGCGGACTCCATCTTTCTCGCCAACTCGATTCAATACTCGGACTTCAACG GCCCCGGCGAGAAATCCTGGCAAGCGCGCTATGACCTGGCAATGAGCGCCTACGGTGTGCCGGGGCTGAGTTTCATGGCGCGCTACGCCAACGGCAAGGA TATCGACGGCACCAAGATGGCGCTGGACAGCCCGTATCGCGCATACGGTTATGGCGAAGACGGCAAACATCACGAAACCAACCTGGAAGCCAAATACGTT GTCCAGCAAGGGCCGGCCAAGGACCTTTCAGTACGCCTGCGTCAGGCCTGGCATCGTGGCAACGCCGATCAGGCCGAGGGCGACCAGAATGAATTCCGGG TGATTGTCGATTATCCGATTTCGATTCTTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TAAAAAACCGTAGGACCGGCTTTAGCCGGGAGCACGCCCTCCCGGCTAAAGCCGGTCCTACAAATGGGAGGATGCACACGCAGCTAACCTGGCGTCACAC TCGCGCGCGACCTCCCACTGCACATAACACACCACCACCGGCATGCCATGCTCGGCGCAGAAATCCAGCCAGCGCAGTTGGTTGTCCTGCAAGCGGTCGC CGGGGCCTTTGACTTCGATCATGCGGTAGCGGCGCTGCTCCGGGAAAAACTGGATCAGGTCGGGCATGCCGGTGCGATTGGCCTTGATGTCCAGCAGCAG TCGGCGAAACCAGTGGCGCAAATGCTCCACCGGCAAGCACAGCAAGGCCTGTTCCAGCAGTTCCGGTGTCAGCGCGCCCCAGAATACGAACGGCGATTGC AGGCCGAACTTGCTCAGATAATGCGCACGGATGGTGGCCTGCCATGCATCGCAATCCAGCTGTGCCAGACATTCCTCGAACAATGCGGCGCGACGCTGAT
|
|
| Amino Acid Sequence |
>Basic amino acid, basic peptide and imipenem outer membrane porin OprD precursor
MKVITISLIAVAITAAAMQSAAAEALVSDQNEAKGFMEDAKANVLLRNYYFNRDGKNGIGDRRDWSQGVLGNFSSGFTQGTVGFGVDAYGWFGLKLDGGA GRSGTGNIPVDSDGSPESNFSSAGGALKLRFSKTLLKWGQMQPTAPVFAAGGTRLFPQTATGLALQSSEITGLDLEAGHFTAANGPQHTDSDGEIFATYA GVTANSVDYVGGKYAITDALSVSLYGSEFEDIWRQYYANANYTLALANDQSLLFDFNIYRTNDEGQAKAGDISNTTWSLSGAYAFLAGHTITLAYQQVHG DEPFDYAGFGDNGPGSGADSIFLANSIQYSDFNGPGEKSWQARYDLAMSAYGVPGLSFMARYANGKDIDGTKMALDSPYRAYGYGEDGKHHETNLEAKYV VQQGPAKDLSVRLRQAWHRGNADQAEGDQNEFRVIVDYPISIL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|