Pseudomonas chlororaphis YL-1, P637_RS0116020
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis YL-1 contig60, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCGCCCGCTACTCCGACGACTGGCACCGCGCGCACCTGTACAACCCGCGCAACGTGGTGCCCGAGTCGAAGATGCCGGCCTACCCATGGCTGGTCACCC AGGCGGTCGACAGCAGCCACACCGAAACCAAGCTGCGCGCCATGCGCACCCTCGGCGTGCCGTACAACGACGACGATATCGCCGGTGCCGTCGCTTCCCT CAAGGGCAAGACCGAGATGGACGCCCTGGTCGCCTACCTGCAAGTGCTTGGCACTGCGATCAAGAGCAAGAGGTGAGCCATGGGTCTTGAACTCGATAGC GGCATGATCCGCGGGCTCGGCACGCTGGTGGTGATGATTGCCTTCATCGGCCTGTCGATCTGGGTTTTCAACGCCAAGCGCAACCCGGAGTTCGCCCAGG CGCGCCTGCTGCCCTTCGCCGACGAACCTTCGCCGGAAGTGCCCGGCAATCCATCTGATGACGCTCAATCCGAAGAGCATGCGACAAGGAGCATTCGGCC
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| DNA Sequence for Gene |
>P637_RS0116020
ATGACCACCTTCTGGAGTACGTACATCTGCGTACTGACCATAGGCAGCCTGATCGGCCTGACCTGGCTGTTGATCGGCACGCGCAAGGGCGAGACCAAGG GCAGCGTCGACCAGACCATGGGGCACGCGTTCGATGGCATCGAGGAGTACGACAACCCCCTGCCGCAATGGTGGTTCCTGCTGTTCGCCGGCACCCTGGT GTTTTCCGTCGGCTACCTGATCCTCTACCCGGGCCTGGGCAACTGGAAAGGTATTCTGCCGGGCTACGAGGACGGCTGGACCCAGACCAAGGAATGGGAA AAGGAAATGGACAAGGCAGACGCCAAGTTCGGCCCGATCTTCGCCAAGTTCGCCGCCATGCCCGTGGAAGAAGTGGCCAAGGACCCGCAGGCGCTGAAAA TGGGCGGACGCCTGTTCGCCTCCAACTGCTCGGTGTGCCACGGCTCGGACGCCAAGGGCGCCTTCGGCTTCCCTAACCTCGCCGACAACAACTGGCGCTG GGGCGGCAACGCCGACACCATCAAGGCCACCATCATGGGCGGTCGCATGGCGGCCATGCCGGCCTGGGGCGAAGTGCTGGGCGAGGACGGGGTGAAGAAC GTCGCGGCCTATGTGCGTCATGAACTCGCCGGCCTGCCGTTGCCTGCCGACAGCAGCGCCGACCTCGTCGCTGGCAAACAAGCCTTCAGCACCACCTGCG TCGCCTGTCACGGCGCCAACGGCCAGGGCACTGAAATCATGGGCGCGCCGAACCTGACGCAACCGGCAGGCTTCATCTACGGCACCAGCCTGACCCAGCT GCAACAGACCATTCGCCACGGTCGCCAGGGCCACATGCCGGCGCAGAACGAACTGCTCGGCAACGACAAGGTCCAGCTGCTCGCGGCCTACGTCTACAGC CTCTCCCACAGCAGCAAGCCAGAAGCTGCAAGCGATAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAGATCAACGGCAAGCTGTGAGTTTTTGACTTGCAGCTTGCAGCTTGAAGCTTAGCCCTCCTCCTTTGCGACCAAGTGTCGCACCCTCTCTACTCCCTGC CTTTCCACTCTCCGGATTCGGGTCTAAGCTGCTTCGCAGTGGACTGGCACTGGCCGGTCACAGACCAGAAGTAGCCGCTCCATTCGAAGCCGTTGTTCGA GGACAGGCCGCAAAGGCTGGTTTATACCGGCTGTCGCGCCACTTACCGTCTGTCGCTCGTTCAAGGGCTTTCCACACACCCGGTTACAACTGACCTGTAC CCCTCGCCTTTTTCATCCGCTGCGACATTTTGTCCGGGGCCGATTTTGTCCTTACTCCGCGCATGGAAAGGCCGCAGAATCAGCTTTTGAAAGCATTGAC CCAGGTCATGGCGCGTTGCAATGACCCCCCGCTTTCTCCATACTTGCGGCCGATTTTTACTCCTAATAAAACACCCAAACCGTGGAACCTTAGAATGAGC
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| Amino Acid Sequence |
>cytochrome CBB3
MTTFWSTYICVLTIGSLIGLTWLLIGTRKGETKGSVDQTMGHAFDGIEEYDNPLPQWWFLLFAGTLVFSVGYLILYPGLGNWKGILPGYEDGWTQTKEWE KEMDKADAKFGPIFAKFAAMPVEEVAKDPQALKMGGRLFASNCSVCHGSDAKGAFGFPNLADNNWRWGGNADTIKATIMGGRMAAMPAWGEVLGEDGVKN VAAYVRHELAGLPLPADSSADLVAGKQAFSTTCVACHGANGQGTEIMGAPNLTQPAGFIYGTSLTQLQQTIRHGRQGHMPAQNELLGNDKVQLLAAYVYS LSHSSKPEAASDK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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